Lacc005992.1
Basic Information
- Insect
- Lerema accius
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold938:40395-44199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.06 3.7 8.1 1.4 1 19 127 145 127 145 0.97 2 14 0.0083 0.51 10.8 0.1 1 21 206 226 206 227 0.95 3 14 4.2e-05 0.0026 18.1 1.4 2 23 254 276 254 276 0.95 4 14 0.21 13 6.4 5.5 1 23 284 306 284 306 0.98 5 14 0.00041 0.025 15.0 1.8 1 23 314 337 314 337 0.95 6 14 0.00016 0.0097 16.3 1.1 1 23 343 365 343 365 0.98 7 14 8.7e-06 0.00054 20.2 3.0 1 23 371 393 371 393 0.98 8 14 1.4e-06 8.6e-05 22.7 1.8 3 23 401 421 399 421 0.96 9 14 2.6 1.6e+02 3.0 0.7 1 11 427 437 427 438 0.92 10 14 1.9 1.2e+02 3.4 0.0 10 23 453 466 452 466 0.96 11 14 1.9e-08 1.2e-06 28.6 0.4 1 23 472 494 472 494 0.98 12 14 0.00044 0.027 14.8 0.9 3 23 502 522 500 522 0.98 13 14 9.2e-05 0.0057 17.0 3.4 1 21 528 548 528 550 0.96 14 14 0.71 44 4.8 1.0 1 12 556 567 556 577 0.92
Sequence Information
- Coding Sequence
- ATGCCCGATGACTATTCTACGGATCACAGTTTAGAAATCCTTGCATCAGTCCTTAGCAGGCATAATAACAGTATCACAATGGAATCCAATGTTAAACCCAGTGTTAATTCCATTTGCCGCGCCTGTTTATCCGATTCAGGCAACATGCACGATCGAACCCTGTTCGAAGTTCTTTCTTTCGTGACTAATATCAACGTCTCCTCGAACGATAACTACCCAAAACAGCTCTGCGACGAGTGCTTCAATCTAATGTGCAAGACTGACGAGTTCAAAAAAACGTTTATGAAATCCGACAGCGTTTTAAAAGTTATGTTTAAAAGTGGTCAAACGAGCGAAAATGGCGTTAAAATCGAGGCTAGTAAATCGGGTTTTGAGCCTTTTCAATGTACTATTTGTTTCGAGAAGTTCATGTCGTGTACAGCTTTAGAATCCCACGACACGAATAAGGAAATGGCAGACTACATTGAGATGCCTGTGGCTATATCCTGTGATACACCAACCAAGCCTTACGAGGTGAAAGAAGAGAATGATATGGGGACAGATTACACAGAATACTTTGATGTAGACACTAGTTATGCTGAAACAGATTATAAACAAGAGGATGAGACAAAAACATTTGAATGTAACTCTTGCGACTTGCCTTTCATAGATGAAAAAGACTATAAAATACATGCTAGAAGCTGTAACGTCTCTATAGCTCGTGTACCGTTACGTACGAAGTTCAAAAAGCCTATTAAACAAGCAGTTAAGAAGAGAGAAGTGTGTTCGAAGTGTGATTCAAGTTTCTCATCACTAAAAACACTAAGACGTCATCAACGGGAAGTTCATAAAGATGACAGCGGGGAAATATACCATTGCAACACTTGCATGCGTTCTTTTTTACGTAAAAACTCATTTTTATCTCATATGAAAATGCATGAGTCGAAAGACCGGTTGAAATATGTTTGTAACACTTGTAAGAGAGAATTTCAGCACCAGGCACATTTAGATAACCACATATTGGCCGTACACACTCGTGATAAGGGATATAGCTGCGAAATTTGTAGTGTAAGCTTCACAACATTAGAATGTCTCAATATTCACAAGGCAACGCATAAAGTTGAGAAGAAACATCAATGTAAGCTTTGTAATAAAGCTTTTCAGATGTTGTCAACATTAACGGAACATATGCGGACACATACAGGAGAGCGGCCACACTTGTGTTCCATTTGTGGCCGAGGGTTTACTCAGAAGAACAATTTGGAGCAGCATGTAAGACGGCATAAAGGTCTCAAGCCGTTTAAATGCGACACATGTGAGAGAAGGTACAGTATTTATCTAGTTCCATTTTTAAATACAATATTTTTTTATAACTTATTTGTATCTAAAGGCGAACTAGTAGCGCACGCTCGTAAGCACAGCGGCGCGCATCCGTTTGTCTGTGATGACTGTGGGAAGGGTTTCACCACTTCCAGCTCTTTGGTGAAGCATCGGAGAATACACACCGGTGAACGACCCTACGGCTGTGACCTCTGCACCATGAGATTCTCTGCTTCAGGCACTTTAAAGAACCACAGAAGAACTCACACCGGTGAAAAACCATACCAATGCTCGCATTGTGAGAAGGCATTTGTTCAACGACAAGATTTAGTGTCCCATATACGTTGCCATACCGGTGAACGTCCCTATGTCTGTGCTAACTGCGGACAGGCCTTTAGGAAGTGCTTATACAGCTTTTCAACTATAAAAAACCATCTTTTAGGGGTTAGTAATGAATTTAAGCAAAAGGTA
- Protein Sequence
- MPDDYSTDHSLEILASVLSRHNNSITMESNVKPSVNSICRACLSDSGNMHDRTLFEVLSFVTNINVSSNDNYPKQLCDECFNLMCKTDEFKKTFMKSDSVLKVMFKSGQTSENGVKIEASKSGFEPFQCTICFEKFMSCTALESHDTNKEMADYIEMPVAISCDTPTKPYEVKEENDMGTDYTEYFDVDTSYAETDYKQEDETKTFECNSCDLPFIDEKDYKIHARSCNVSIARVPLRTKFKKPIKQAVKKREVCSKCDSSFSSLKTLRRHQREVHKDDSGEIYHCNTCMRSFLRKNSFLSHMKMHESKDRLKYVCNTCKREFQHQAHLDNHILAVHTRDKGYSCEICSVSFTTLECLNIHKATHKVEKKHQCKLCNKAFQMLSTLTEHMRTHTGERPHLCSICGRGFTQKNNLEQHVRRHKGLKPFKCDTCERRYSIYLVPFLNTIFFYNLFVSKGELVAHARKHSGAHPFVCDDCGKGFTTSSSLVKHRRIHTGERPYGCDLCTMRFSASGTLKNHRRTHTGEKPYQCSHCEKAFVQRQDLVSHIRCHTGERPYVCANCGQAFRKCLYSFSTIKNHLLGVSNEFKQKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -