Lacc014973.1
Basic Information
- Insect
- Lerema accius
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold549:424978-448557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.051 3.1 8.4 0.9 9 23 1 15 1 15 0.97 2 22 5.7e-05 0.0035 17.6 4.3 1 23 21 43 21 43 0.98 3 22 0.0017 0.1 13.0 1.2 1 22 147 168 147 170 0.90 4 22 1.1 69 4.2 0.1 2 23 196 218 195 218 0.89 5 22 0.066 4.1 8.0 4.3 3 23 243 263 241 263 0.96 6 22 0.02 1.2 9.6 0.4 1 23 267 289 267 289 0.96 7 22 0.00092 0.057 13.8 0.5 1 23 295 318 295 318 0.97 8 22 0.0021 0.13 12.7 1.3 2 23 326 348 325 348 0.95 9 22 1.7e-06 0.00011 22.4 1.3 2 23 354 376 353 376 0.97 10 22 0.55 34 5.1 0.9 1 23 382 405 382 405 0.91 11 22 1.9e-05 0.0012 19.2 1.7 1 23 411 434 411 434 0.98 12 22 0.068 4.2 8.0 3.5 1 23 542 565 542 565 0.94 13 22 0.36 22 5.7 0.1 2 23 592 614 591 614 0.94 14 22 0.14 8.5 7.0 1.9 2 23 637 658 636 658 0.97 15 22 0.0001 0.0064 16.8 0.7 1 23 662 684 662 684 0.95 16 22 0.34 21 5.8 7.4 1 23 689 712 689 712 0.96 17 22 0.13 7.9 7.1 4.3 2 23 720 742 719 742 0.96 18 22 2.7e-05 0.0017 18.6 0.9 1 23 778 800 778 800 0.97 19 22 0.00043 0.027 14.9 1.9 1 23 806 828 806 828 0.98 20 22 7.2e-06 0.00045 20.5 3.2 1 23 834 856 834 856 0.99 21 22 1.9 1.2e+02 3.4 2.5 1 23 1167 1190 1167 1190 0.93 22 22 0.0033 0.21 12.1 0.1 2 23 1214 1236 1213 1236 0.95
Sequence Information
- Coding Sequence
- TCATTCTCCAGGTCTAGGACGCTCAAGGAACATATGAGGATACACGACGACGACAAAAAATATCAGTGTGAAGTGTGTAGTAAGACTTTTATGCAGAAATGTAGCTTGAAGAGTCATTTACGTTTGCACCAGGACGATTTAGATATATTCAAAGAGTTTGATGATGTTAAGCATTTGATAGATAATAGGGAGATTACACTAAAACAAATCATGAATACTGAACCGGGTGTCACAAATTATTTTTCTTTTATAGGCCGGACGAGAGCATCAATAAAACGAAAGAGGACTTTAAAGCTGGATCACGAGGAGAATGAGATAATCCCTAATTTAGTTACTCGTGAAAAGCATCCGCCAGAGATGCAGAAACAGTGGCACAATTTGACCACCTTGCTCAAATACTCGAACGCAACGCCGTTCAAAGACAGAAACGACGCGGGATACGTCTGCGCGTACTGCTACAAGACATATCCCGACCCTGACACGTTGCGTAACCACAGCACCCATGATCATGTCAGGGAAAAACCCTCGTACAAAGCCTGCTCGGGAATGAGCAGTTTCGTAGCGTTCTTAGATATTGTAGACTTAAAATGCACAATCTGTGATCTCCCTATGGATAGCTTAAGGACTTTGACGGAGCACTTAGTTAATGCACACGAAAAGAAGTACTATCTAGAAGTAACCGATTACTTTCAACCGTTCAAGCTGACGAATGAACAGCAGATGAACTGCTGCCTCTGCAACGAAGTGTTTCACAATATGAAGCTGTTGATGCAGCATATGAATAATCACTTTCGAAATTTCATTTGCACCATATGTGGTGCGGGCTTCGTGAATAGCTTTCGACGGAATCGACATGAGACCACGCATGCGAAGAAATCGAGCTTCTCTTGCAAATATTGTGGACAAAGTTTTGCAGCGGAGTCAAAAAAAAAGGCTCACGTGAATACAGAGCACAAGGGCATAGCTGGTGACAGTGTATGCCAAATATGCAAAGCTAGATTCAAAAACTACTATCAGAAGACGAGGCACATGATGCAAGTACACAACGTCGAAGGAATCAAATGTGATAAATGTGATAAGAAGTTTAATTTGAAGTCGAACTTGATGCTGCACATGAGAAGCGTTCATTTGAAAGAGAGGCCGTTCGAATGCTCTGTGTGTAACATGGGATTCTTCATCAAGAGGCATATGATAGGACACTATATGGCAACGCACACGAACGAAAGAAAGTTCAAGTGTGAAGTGTGTGGTAAAGCGTATGCAACACAGAACAGTAAACGAAAACATATGAAAAAAAATCACGGAATATCAAAAAACTCAATTCTTTCTAACTTGCCGAATGTTGTGATGTACCTATCTGGAATTGTTGTTTTGTGTTTATTTCAAGATTTCAAAAAATTGGCATTCAATGAAAAAAATAAAACAATGAAAGATTCTGTATGTAAAATAACACCTAAAGCAATTAATTCAGAAAAAAGGAAGAAACCAAACCCTGAAACACTAGCCCTTAATAAACTAGAAGCTAATAAACGTCTAGACGAATTACGTAAACATTTGCATAACATTAGAACTGTTCTATTAAATTCGAATGCAACACCAATAAAACATCATAACGGCACGGGCTATATTTGTGGATATTGTACAATGTGCTGTGAAAAGCCAACAGATCTAAAGACACATACTTTAGAAACGCACGATGATTCTCAAAAAGTTACATTTATGAAACAATCAACTTTGTCAGTCCATTTGGTTATGATTGATATAACTAACTTGAAATGCAATAGCTGTAATAAGAATATCGAGGTATTGGAAGAGCTAATAAGTCATTTGCAACAAGAACATAGTAAAAACATTTATATTGATATCAAAAACCGTATAATCCCATTTAAATTTGGCGAAGGCTCTATTAGATGTTGTATTTGCACCAGCCCATTTGGAACTTTTAAAGTTTTACGTCAGCATATGAATATGCATTACGGAAGTTTTGAATGTAAAGACTGCCCTCAGATGTTTATAACACGAAAATTGTTAAAGAACCACGAATCACTCCATAAAAAGGGTGAATTTAAATGCTCTTATTGCCCAAAAATGTTTGACACGCACTGTTACAAGTATTATCATGAAAGGACTATTCACCAGCAGAATCAATTAAGAAACAAATGTCCACATTGCGATAGAAAATTCCTATCATACAGGACTAAACGTAGGCACATGGAGAAGGAACATGGAGTCGAGCCACGGGTGCTGAATTGCATGGCTTGTGATAAAAAATTCCCATGTAAATCCATATTGACGGTTCACACTAGACGGTGCCATTTGATGCAGAAGGATTTCTCGTGCGACGATTGTGACATGAGTTTTTTCACTAGATCTGAGTTGCGTCTACATTTGGTAAAGCATACGGGCGAAAAACCATTCAAATGTGCGATTTGTTCGAAGGCGTACGGCCGGAAATGTTCCCTGAAGGAACACGAGCGTATCCATCTGAATGACCGCCGATTTAAATGTGAACATTGTGGAGCGGCGTTTGTCCAAAAATGTTCATTGAGAACTCATATGAACGTTCATTGTATTCAAAGTTCTTTTACATGTGCACAACGTAAAGGTACCGTCAGTGTCGTGACCACAGACATTAAAACAATAACTGGTCCGGCTGTACTACTTGTAGTGAAAGAGGAGATACCTGAACAGACCAAGGCGAAGAGCATCAAAAAAACGGCAGCCAAAAAAAACAGCCAGAGCGCAATAAAGTCTAAAAAAATTATTACCATATCTGATAACGAAGATGTTGAGGAGAAAAAAAGAAAATACAACAGTAGAGCAGGTACATTCGTACAACAAAAAGGTAAAGGTACTTATAAACTACAGAAACGTAACATGATATATCAGGAAGAAGTGACGCTGAAAAAGGATTATTCAAGCAGATATTCTAGTCAACAACGTCACGTTATCATCAAAATAGATAACTGGGATTGTAGAACTGGGAAAATCCGAACAGACCGTATTGTATTGAAAAAAGTAAGTAAAGACGAAAAAGCGCAATCAATATCAAAACGTAATGAAGAAGAGAATAAAGCTGTTAAAAGTAAAAACGTAGAAGATAACACTAAAGAAGAATTAAAACCAGAGATGTTAGGGTTAGGTAAACAGCACGGAACAAAAGAAGACATAGAAGTCGATATCAAAAACGTGAATAATTTAAATGAAGATGTTGATGAGAAAAAACCAGAAATCCGTGCGAGACGTATCACCAAAACTGTAAAGCGACCGACAAAAATCAAGGATGAGCCGGATATTTTAGACGAAAGTGAAAGCCAACAACAGACAGGACCAAAAGTACTGGAAGAAGAAACTAATGAAAATGATAAAATGCAAGTTTTATCCAAGCCCCAATCTTTATCCAAACCTATCAAAGAATCTAAAAAACATTTAGCAAATTTAAAAAGTATTTTAGAATATTCAAACGCAACTTTAATAAGAGGTAAAGACGGCGATGGCTACAAATGCAACTTTTGCATAAAGAAGTACCAACTACCCAAAGACTTGAAAACACATTTCCTGCAACAACACAACGATTTTAAAACTATAAAGCTACCTAAGATCTTCCAGTACGTGTTGAAAATAGACATCACGGAACTCTCCTGCAATATATGCGGCAATGGTTTCGATAAACTTGAAGATTTAACAGATCATCTCCAAAATGTGCACGAGAAAATTATTTACACTGATATACAATCGGACATGGAAGAAGCTGAAATTCAAATAAGATTCAAGAATGACATGACGATGCCTCGAAGAGAAGTTGACAAACACTTGAACAATATAGGAGAGATATTAATCAACACAAATGCAACTCCAATCAGATGCCACGGCTGTAAAGGGTACGCTTGTAGCTTTTGC
- Protein Sequence
- SFSRSRTLKEHMRIHDDDKKYQCEVCSKTFMQKCSLKSHLRLHQDDLDIFKEFDDVKHLIDNREITLKQIMNTEPGVTNYFSFIGRTRASIKRKRTLKLDHEENEIIPNLVTREKHPPEMQKQWHNLTTLLKYSNATPFKDRNDAGYVCAYCYKTYPDPDTLRNHSTHDHVREKPSYKACSGMSSFVAFLDIVDLKCTICDLPMDSLRTLTEHLVNAHEKKYYLEVTDYFQPFKLTNEQQMNCCLCNEVFHNMKLLMQHMNNHFRNFICTICGAGFVNSFRRNRHETTHAKKSSFSCKYCGQSFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLMLHMRSVHLKERPFECSVCNMGFFIKRHMIGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKNSILSNLPNVVMYLSGIVVLCLFQDFKKLAFNEKNKTMKDSVCKITPKAINSEKRKKPNPETLALNKLEANKRLDELRKHLHNIRTVLLNSNATPIKHHNGTGYICGYCTMCCEKPTDLKTHTLETHDDSQKVTFMKQSTLSVHLVMIDITNLKCNSCNKNIEVLEELISHLQQEHSKNIYIDIKNRIIPFKFGEGSIRCCICTSPFGTFKVLRQHMNMHYGSFECKDCPQMFITRKLLKNHESLHKKGEFKCSYCPKMFDTHCYKYYHERTIHQQNQLRNKCPHCDRKFLSYRTKRRHMEKEHGVEPRVLNCMACDKKFPCKSILTVHTRRCHLMQKDFSCDDCDMSFFTRSELRLHLVKHTGEKPFKCAICSKAYGRKCSLKEHERIHLNDRRFKCEHCGAAFVQKCSLRTHMNVHCIQSSFTCAQRKGTVSVVTTDIKTITGPAVLLVVKEEIPEQTKAKSIKKTAAKKNSQSAIKSKKIITISDNEDVEEKKRKYNSRAGTFVQQKGKGTYKLQKRNMIYQEEVTLKKDYSSRYSSQQRHVIIKIDNWDCRTGKIRTDRIVLKKVSKDEKAQSISKRNEEENKAVKSKNVEDNTKEELKPEMLGLGKQHGTKEDIEVDIKNVNNLNEDVDEKKPEIRARRITKTVKRPTKIKDEPDILDESESQQQTGPKVLEEETNENDKMQVLSKPQSLSKPIKESKKHLANLKSILEYSNATLIRGKDGDGYKCNFCIKKYQLPKDLKTHFLQQHNDFKTIKLPKIFQYVLKIDITELSCNICGNGFDKLEDLTDHLQNVHEKIIYTDIQSDMEEAEIQIRFKNDMTMPRREVDKHLNNIGEILINTNATPIRCHGCKGYACSFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -