Basic Information

Insect: Lerema accius
Gene Symbol: salm
Assembly: None
Location: scaffold2075:338420-361227[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.15 9.2 6.9 1.6 1 21 41 61 41 62 0.93

2 10 3.8e-06 0.00023 21.4 0.9 1 23 362 384 362 384 0.98

3 10 7.4e-06 0.00046 20.4 2.1 1 23 390 412 390 412 0.98

4 10 0.99 61 4.3 3.0 5 23 660 678 657 678 0.92

5 10 1.4e-07 9e-06 25.8 0.7 1 23 684 706 684 706 0.97

6 10 7e-05 0.0043 17.4 3.8 1 23 716 738 716 738 0.98

7 10 0.0016 0.097 13.1 1.9 2 23 858 879 857 879 0.97

8 10 3.3e-07 2.1e-05 24.7 1.4 1 23 885 907 885 907 0.99

9 10 2.7e-06 0.00017 21.8 2.3 3 23 994 1014 992 1014 0.96

10 10 4e-07 2.5e-05 24.4 0.5 1 23 1020 1042 1020 1042 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.15	9.2	6.9	1.6	1	21	41	61	41	62	0.93
2	10	3.8e-06	0.00023	21.4	0.9	1	23	362	384	362	384	0.98
3	10	7.4e-06	0.00046	20.4	2.1	1	23	390	412	390	412	0.98
4	10	0.99	61	4.3	3.0	5	23	660	678	657	678	0.92
5	10	1.4e-07	9e-06	25.8	0.7	1	23	684	706	684	706	0.97
6	10	7e-05	0.0043	17.4	3.8	1	23	716	738	716	738	0.98
7	10	0.0016	0.097	13.1	1.9	2	23	858	879	857	879	0.97
8	10	3.3e-07	2.1e-05	24.7	1.4	1	23	885	907	885	907	0.99
9	10	2.7e-06	0.00017	21.8	2.3	3	23	994	1014	992	1014	0.96
10	10	4e-07	2.5e-05	24.4	0.5	1	23	1020	1042	1020	1042	0.98

Sequence Information

Coding Sequence: ATGCCGCGCGTCAAGCCCGCCTGCGTCCGCCGCGTCTCCATCGGTGAAAGCTCCGGATCATGTTCAGAAGAAGATATAAATAATGTTTTACCGGAAGAAGCGAGACATCGACCTGAGGCGCATATGTGCCCTCGGTGTCAAGAACAATTTGAAAATCTTCATGATTTCTTATATCACAAGCGAGTATGTGATGAAAAAGCGATTCAAATGGGCGAGGAGAGAATGCATTCTGATCCCGAAGAAATGGTAGTTTCTGGGGACGAAGAAATGGACGGACCCAATAAACGGTTGGAACAAGTGAGGAGGCATAGACAGGATGCCGAAAATAATAATAGCCTCGAAGATGGCGAGGCAGAAGTACCTGAAGCTGATGTGCCGCCAGTCGGACTCCCGTTTCCTATTGCCGGTCACGTCACACTTGAAGCTTTACAGAATACGAAGGTGGCAGTAGCACAATTTGCTGCAACGGCGATGGCTAACAATGCTGATAATGAAGCCGCTTTACATGAGCTCGCCGTATTACAGAGCACGTTATTTACGTTACAACATCAACAAGTTTTTCAACTACAGTTAATACGCCAATTACAAAATCAGCTCTCATTAACCCGACGAAAAGATGATCAGCACCCCAGCCCACCGCCCAGCGAACCGGAGCCGAACGTACCGATGCCTCCAGCTCGATCGCCGTCGCCGCCTCGTCCTCCGCGGGAGCCATCTCCTGTTGCGCCCACTCCTCCCACTAGCCAAAGCTTGCCGTCATCACATTCACATCTTACACCTAAATCAGAACCGATTTCCATTCCCAAAATTCCAACATCTTCCCCACCTATGATGACCCATCCACCATATAGTTCCATTTCGTCATCATTAGCTTCATCAATTATCACAAATAATGATCCTCCGCCGTCCTTGAACGAGCCCAATACTCTTGAAATGCTTCAAAAACGAGCGCAAGAAGTACTAGATAATGCATCGCAAGGTTTACTGGCGAACAACCTTGCTGATGAACTTGCTTTCCGCAAGTCAGGGAAGATGTCACCGTACGATGGGAAAAGCGGAGGAAGAAATGAACCATTTTTCAAACACCGCTGTCGATACTGTGGAAAAGTGTTTGGCAGCGATTCGGCGCTACAAATTCACATTCGTTCGCATACGGGTGAACGACCTTTCAAGTGTAATGTTTGCGGTTCCCGATTTACAACCAAAGGAAACCTCAAAGTTCATTTCCAAAGACACACTGCCAAATTCCCACATGTCAAGATGAATCCTAACCCAATACCAGAGCATTTGGATAAATATCATCCTCCACTATTAGCGCAACTATCACCGGGGCCGATACCAGGAATGCCGCCCCATCCACTTCAATTCCCTCCAGGGGCACCAGGCCCTTTCCCGCCAAGCTTGCCGCTATACAGACCGCCTCACCATGATTTACTTCCACCTCGTCCACTGGGAGATAAGCCCTTGCCACCTCATCCACTTTTCGCCATGCGAGAAGAACAAGACACGCCAGCAGATCTCAGTAAACCTTCAGCGCCTAGTCCTTCTCGATCTGCACCAGATATGTTTAAATCTGAACCTCAAGACGAAGACTGTCAACGAGATTCAAGTTTCGAAGAAAATGATCGGATAACGCCTAAACGTGAACCTGATGAAAATGACGCCGTACAAGATTCTGAACAAGATCGATACCCTTCAACTTCTCCGTATGATGATGGCAGCATGGATTCCAAGTACAGCAACGAAGACCAAATCGGCAGAGAAAGTCCACACGTGAAGCCCGATCCAGATCAACCGGAAAATCTTTCAAATATATCTCGGGACCCGTCATATTACAACTCACTATTACCGCGCCCGGGAAGCAACGACAATTCATGGGAAAGCTTAATAGAAATTACGAAAACATCAGAAACATCGAAATTACAACAATTGGTAGATAATATTGACAACAAAGTTTCCGATCCCAACGAATGCATAGTCTGTCATCGTGTTCTTTCTTGTAAAAGTGCTTTGCAGATGCATTATCGAACTCATACCGGCGAAAGACCCTTTCGTTGTAAATTATGTGGTCGCGCATTTACTACTAAAGGCAACTTAAAGACGCATATGGGCGTTCACCGTATAAAACCTCCGTCACAGATGTTACATCAATGTCCAGTTTGCCACAAAAAGTACGCCGATCCAACAATGTTACATCAGCATATACGCCTTCACACAGGCGAACGTCTCAATGTTCCCTATGATCAAATCCAAAAAAGTGAAATTATCGATTTCTCACAATTCAACGACGGGTCAGACGTTAGCGATTATCCCTCATATCGTCCCGCCCCACCCTCTTTGTTTCCTACTCCTTCTACTCCCGGCGACCGACGGGCGGACTCCCGCGGAACCGACGATGAGAGCGGCCGGGACGAGCGCGAGCCCGCTACTCGGGAGTTCGACGACGACTCTGATTTAAAGGATCGTCGAACTTCGCCGCTCTCCGTCTGCGCCTCGGCGTCCGAATCTCTCGGCGGATCGCCCTTCAGCCCGCTTGGACTTGCGTTTCCTCCCGCAGTGCGCGGCAACACGACCTGTAACATCTGCTACAAGACTTTCGCCTGCAACTCTGCACTAGAGATTCACTACCGCAGCCATACCAAGGAGCGACCGTTTAAGTGCACCGTGTGCGATCGTGGTTTCTCGACGAAGGGCAACATGAAGCAGCACATGCTGACGCACAAGATCCGGGACATGCCGCCAGGGTTCGAGAAGCCCCCGGGCGGTCCCGTGGGCCCTGGAGGCCTCGACGAGCCCCGGGACCCCAGTCCCGACCGCCGCTCCTCCCCGGACAAGATGGACCTCAAGAGGTCTCCGCCCGTGCACCCTCCCCCACCCATGTCGCATACTTCGCCTATCGACATGCCTCCGTTACCTAAACGACCCACCGTACCTAGCTGCCCCCCTCACCCACCGCCTTCCGCGTCGTCGAAGCACCTGTGCAGCGTCTGCCGGAAGAACTTCTCATCGTCATCAGCTCTTCAGATCCACATGCGCACGCACACCGGAGACAAGCCGTTCCGCTGCGCTGTCTGTCAGAAGGCTTTCACCACCAAAGGAAATCTTAAGGTTCACATGGGCACACACATGTGGAGCGGCGGCGCGTCGCGGCGAGGACGGCGCATGTCTCTGGAGCTGCCTCCCCGGCCGCTGCACGAGCCGCACGAGCTACTGCGGCGGCCTGATCTCTTCTACCCTTACCTGCCGGCGCCATTCCTCAACGGCATGCAGCAAAAGATGATTAAACTACGCATGTTCCTTAGTATTCAGTTAGAAAACCACGATTTTATACGCCATGCAGATGTCGCCATGTAA
Protein Sequence: MPRVKPACVRRVSIGESSGSCSEEDINNVLPEEARHRPEAHMCPRCQEQFENLHDFLYHKRVCDEKAIQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPIAGHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQHPSPPPSEPEPNVPMPPARSPSPPRPPREPSPVAPTPPTSQSLPSSHSHLTPKSEPISIPKIPTSSPPMMTHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPIPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPGPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDTPADLSKPSAPSPSRSAPDMFKSEPQDEDCQRDSSFEENDRITPKREPDENDAVQDSEQDRYPSTSPYDDGSMDSKYSNEDQIGRESPHVKPDPDQPENLSNISRDPSYYNSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRAFTTKGNLKTHMGVHRIKPPSQMLHQCPVCHKKYADPTMLHQHIRLHTGERLNVPYDQIQKSEIIDFSQFNDGSDVSDYPSYRPAPPSLFPTPSTPGDRRADSRGTDDESGRDEREPATREFDDDSDLKDRRTSPLSVCASASESLGGSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKGNMKQHMLTHKIRDMPPGFEKPPGGPVGPGGLDEPRDPSPDRRSSPDKMDLKRSPPVHPPPPMSHTSPIDMPPLPKRPTVPSCPPHPPPSASSKHLCSVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHELLRRPDLFYPYLPAPFLNGMQQKMIKLRMFLSIQLENHDFIRHADVAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00820333;
90% Identity: -
80% Identity: -