Lacc013339.1
Basic Information
- Insect
- Lerema accius
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold3840:59012-66213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0069 0.42 11.1 5.0 2 23 199 220 198 220 0.96 2 16 0.086 5.3 7.6 0.4 1 14 225 238 225 243 0.88 3 16 0.00054 0.033 14.6 1.5 2 23 266 287 265 287 0.96 4 16 0.00012 0.0076 16.6 2.0 1 23 294 316 294 316 0.98 5 16 4.7e-05 0.0029 17.9 1.2 1 23 322 344 322 344 0.95 6 16 0.001 0.063 13.7 0.4 1 23 350 372 350 372 0.96 7 16 7.2e-05 0.0045 17.3 2.2 1 23 378 400 378 400 0.98 8 16 2.7e-06 0.00017 21.8 1.8 1 23 406 429 406 429 0.98 9 16 3 1.8e+02 2.8 0.2 2 23 524 546 523 546 0.91 10 16 0.15 9.1 6.9 0.0 2 20 609 627 608 628 0.95 11 16 5.4e-06 0.00033 20.9 0.6 2 23 653 674 652 674 0.97 12 16 1.5e-06 9.1e-05 22.6 1.2 1 23 682 704 682 704 0.98 13 16 0.0071 0.44 11.1 2.1 1 23 710 732 710 732 0.96 14 16 1.6e-05 0.00097 19.4 2.1 1 23 738 760 738 760 0.97 15 16 0.0064 0.39 11.2 3.9 1 23 766 788 766 788 0.97 16 16 1.4e-07 8.8e-06 25.8 2.3 1 23 794 817 794 817 0.98
Sequence Information
- Coding Sequence
- ATGAGTGATTCGGAAACTGCTAATTGTCGGTTATGCGCTGACCTGCAGCCGCTCAGTAATCTTGTGGATCTTCAAAAAGATGAAGAAAAACGTCAGAAAGTCACGAAGAAACTCATCCGTTTATCTTTAACCACTAATTTAGATAGCTCTTACGACGCTCTTGCTAAAACTTCGTTAGATGCGGCATTTGATTTTGTAATTCATGTGGAAAAAGCACAAAATAGGCTTGCTGAAGTAGGCATAAAAGAAGAACTCAATTGCTCCAATATGTACTATTCTTTCGAAGAAAATTACGACGATCGCTCCGTGAAAGAGGAACCTGACACTGGTAGTGACTTGGAAATAACGATTAAAAGTCGAAAAAGAATTAAAGTTGAAAAAAATTCAAATGTTGATAACAAAGATTGCCTTGATATTCCCATATCATCTTGGAAAGACTACAATTGTTTTCTTAATATCGACGAGCTCAAAGAACATTCTATGGCTTTTCACGGTTGCTGTAATCCTTATCGTTGCTCAGATTGTAATTGCAGAAAATTACGTCTGGACAGCTTCGTTAAACATGTAAAAAAACATAGACAACACCTAAAACTTTCTTGCTACAAATGCCATATGACATTTTCTAGACAATATGACACTATAAAACATAGAAAGCAACATCTGAGTTCCGAATTTAAATGCAGTGGTTGTAACGAAACTTTCCCAACATTAAAACAGTCAGTGGAACACTCTGATTTATACAATAGAGATAAGAAATCTCGGGATGTACCTGTTCAACACTTAACTGACGACTTAACTTGTGTATTTTGCTCCAAAAAATTTAAGCATAAGGGTGGTCTCGCCCAGCATTTACTAATTCATACAGATCGAAAACGAAATCATACTTGTGAGATATGTGGTAAATGCTTTCTTAATAAACCGACTCTTGCTGGACATATGATGACGCATGAAGGAACCAAGCCACATCAATGTGAAATGTGCACTCAACGGTTCCGTACTCTGTCCCAATTACGTGCACATGTAGGAATACATGATGGAAAGAAACCATTCTCTTGTGAACAGTGTGGGAAGCTTTTCAGACTCCAACGGCAGCTCGCTTCACACAGTATCATCCACACTGATTCTCTTCCTTTCGTTTGTACATACTGCGATAAAGGATTTAGATTTAAAACCATCTTAACACAACATATGAGGCAACATACAGGCCTAAAGCCCTATGAGTGTCAAATGTGTCAGAGAGAGTTCACAAATTGGCCGAATTACAATAAGCACATGAAACGGCGACATGATATCAACATGGCCAAGAGAAAACAAACCCCAGGTGGGCTTTTGCCAATAAATCCCACCACAGGTGAAGTCGATAAATTACCAGAGACAAATAAGACTGAATTGGATCCTAACATTGATGATAGCCTAATATCAGCTGACTTTGATCAAACTTTAAACGTACAAGATATATTAGACGCCGCGATGTGTAAAATGCCATTCTCTGAAGATGTTGAGATCTACGCTAAAGAAGTTTCTGGTATTGATAAAAAATCTATTACTCTATGGAAAGATTACCCGTGGGTATGTTCGTTTTGTAACATAGAATTTCTAGACATTGTAACATTGAGATCTCATTCTAAAATTACCCATGGCAAATGCCATGCATTTACATGTATAGATTGCAAGAATTATGGGAAAAGTGACTTTGACTCATTTATAAAGCATGTTAGACGGCACAGAAGAAAACTAAGAAAAAGATGTCACTACTGCGACAAAATTATCACCGAGGAAAGCTCAAGATCTCATTTACAAAGCCATTTACAAAAGAATGAAGTCTCTTGCCAGCTGTGTGGAGAAATATTGAGAAATGACGAGGCATTGCAGAAACACTTAGGAGAATATAACTTGACTAAACCTAAACGGAAGCCAAGGAGAAAACGGGGAACTCCAATCACAGAGGCCGACCTTACCTGTGAGCTTTGCAAAAAGGTGTACAAAAACCCAAATAGTTTACGGGACCACATGAAAATTCATATAGACAACCGTAAAAGGAATTTCACTTGCGATCGGTGCGGGAAAATGTTCTATAATAAGGGTACTTTAACCTCCCACATCATGTCCCATGACAAAATCCGTCCACACAACTGTAGAATATGTAATAAATCATTTCTATTCCCCAACATGTTACGTCGACATGTGGAAATGCATTCGGGTGTGAAACCATATTCCTGCGAACAGTGTGGACGGTGCTTTAGACTGCAATACCAATTAAACGCTCACAAAATAATTCATACGGACTCAATGCCTCATGTATGCCAGTATTGTAATAAGGCATTTCGTTTTAAGCAAATACTTAAAAACCATGAACGGCAACATACAGGTGCAAAGCCCTATTCATGTCAATACTGTGGTATGGAGTTTACGAATTGGTCGAACTACAATAAGCATATGAAACGAAGGCACAATACTGACACATCTAAAAAGAAAATCACTCCTGAAGGTGTGTTCCCGATTAATCCTCAAACTGGGCAGATATTTCAGCACCAGGATCCAGGAACAGAGGAATGGAAGACCAAGATCATGATACCAGCTAAGAGAGGAAAGAAAAGAGTGATTAAGCAAGAAGATATTTAA
- Protein Sequence
- MSDSETANCRLCADLQPLSNLVDLQKDEEKRQKVTKKLIRLSLTTNLDSSYDALAKTSLDAAFDFVIHVEKAQNRLAEVGIKEELNCSNMYYSFEENYDDRSVKEEPDTGSDLEITIKSRKRIKVEKNSNVDNKDCLDIPISSWKDYNCFLNIDELKEHSMAFHGCCNPYRCSDCNCRKLRLDSFVKHVKKHRQHLKLSCYKCHMTFSRQYDTIKHRKQHLSSEFKCSGCNETFPTLKQSVEHSDLYNRDKKSRDVPVQHLTDDLTCVFCSKKFKHKGGLAQHLLIHTDRKRNHTCEICGKCFLNKPTLAGHMMTHEGTKPHQCEMCTQRFRTLSQLRAHVGIHDGKKPFSCEQCGKLFRLQRQLASHSIIHTDSLPFVCTYCDKGFRFKTILTQHMRQHTGLKPYECQMCQREFTNWPNYNKHMKRRHDINMAKRKQTPGGLLPINPTTGEVDKLPETNKTELDPNIDDSLISADFDQTLNVQDILDAAMCKMPFSEDVEIYAKEVSGIDKKSITLWKDYPWVCSFCNIEFLDIVTLRSHSKITHGKCHAFTCIDCKNYGKSDFDSFIKHVRRHRRKLRKRCHYCDKIITEESSRSHLQSHLQKNEVSCQLCGEILRNDEALQKHLGEYNLTKPKRKPRRKRGTPITEADLTCELCKKVYKNPNSLRDHMKIHIDNRKRNFTCDRCGKMFYNKGTLTSHIMSHDKIRPHNCRICNKSFLFPNMLRRHVEMHSGVKPYSCEQCGRCFRLQYQLNAHKIIHTDSMPHVCQYCNKAFRFKQILKNHERQHTGAKPYSCQYCGMEFTNWSNYNKHMKRRHNTDTSKKKITPEGVFPINPQTGQIFQHQDPGTEEWKTKIMIPAKRGKKRVIKQEDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -