Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold549:289320-304315[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00043 0.027 14.9 1.0 3 23 283 304 270 305 0.93

2 18 0.22 14 6.4 0.2 3 23 327 348 325 348 0.95

3 18 0.0033 0.21 12.1 0.4 2 23 371 392 370 392 0.96

4 18 0.00086 0.053 13.9 0.2 1 23 396 418 396 418 0.98

5 18 0.001 0.063 13.7 0.1 1 23 423 446 423 446 0.94

6 18 0.00029 0.018 15.4 0.7 2 23 483 505 482 505 0.96

7 18 7.6e-05 0.0047 17.3 0.8 1 23 577 599 577 599 0.94

8 18 2e-06 0.00013 22.2 1.5 1 23 605 627 605 627 0.99

9 18 0.00024 0.015 15.7 2.5 1 23 679 701 679 701 0.98

10 18 0.31 19 5.9 0.2 3 23 728 748 726 748 0.96

11 18 0.006 0.37 11.3 0.8 3 23 770 790 768 790 0.91

12 18 0.16 9.7 6.8 1.9 2 23 795 816 794 816 0.96

13 18 1.9e-05 0.0012 19.1 1.9 1 23 823 846 823 846 0.96

14 18 2.5 1.5e+02 3.0 0.7 1 10 852 861 852 865 0.85

15 18 0.00011 0.0067 16.8 3.0 1 23 902 925 902 925 0.97

16 18 0.0064 0.39 11.2 4.6 1 23 931 953 931 953 0.98

17 18 1.5e-07 9.6e-06 25.7 0.7 1 23 959 981 959 981 0.98

18 18 2.1e-06 0.00013 22.2 1.8 1 23 987 1010 987 1010 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00043	0.027	14.9	1.0	3	23	283	304	270	305	0.93
2	18	0.22	14	6.4	0.2	3	23	327	348	325	348	0.95
3	18	0.0033	0.21	12.1	0.4	2	23	371	392	370	392	0.96
4	18	0.00086	0.053	13.9	0.2	1	23	396	418	396	418	0.98
5	18	0.001	0.063	13.7	0.1	1	23	423	446	423	446	0.94
6	18	0.00029	0.018	15.4	0.7	2	23	483	505	482	505	0.96
7	18	7.6e-05	0.0047	17.3	0.8	1	23	577	599	577	599	0.94
8	18	2e-06	0.00013	22.2	1.5	1	23	605	627	605	627	0.99
9	18	0.00024	0.015	15.7	2.5	1	23	679	701	679	701	0.98
10	18	0.31	19	5.9	0.2	3	23	728	748	726	748	0.96
11	18	0.006	0.37	11.3	0.8	3	23	770	790	768	790	0.91
12	18	0.16	9.7	6.8	1.9	2	23	795	816	794	816	0.96
13	18	1.9e-05	0.0012	19.1	1.9	1	23	823	846	823	846	0.96
14	18	2.5	1.5e+02	3.0	0.7	1	10	852	861	852	865	0.85
15	18	0.00011	0.0067	16.8	3.0	1	23	902	925	902	925	0.97
16	18	0.0064	0.39	11.2	4.6	1	23	931	953	931	953	0.98
17	18	1.5e-07	9.6e-06	25.7	0.7	1	23	959	981	959	981	0.98
18	18	2.1e-06	0.00013	22.2	1.8	1	23	987	1010	987	1010	0.98

Sequence Information

Coding Sequence: ATGAGCGTCATAAAAGGCAAAGGACCCGTTTTCGACCCCGGGTTGTGCAGGTGTTGCGGAGGAATGAGAAAATGTCGAGTTCTAAATGTTGAATATGAAAGTTCCGGCCAGACGGAGGTCTACTGTGACATGATTATGGACTGTTTCGGACTTTTGTTGGCCCATCTAGATGGGAAGCCTACAGAGAGGTTGATATGTGCAATGTGTGTCCAGCGTCTCCGGGAAGCTTTTAACTTCCGTCAACAAGTTCTCCGCTGTGAGGAAATCTTTATACAGATGAAAATGGATGCTGCTAATGCTGAAGCCAGAGGAGTCTCAGGTGCTGTGGAAATCCCGAAGATTGAATTAGAGGTAAAACTTGAACCGATGGAGTCGTATCAATCACCATGCAGAGATGCACTTGCTGATGATGCCTCGGATTATCAATGCAATGTCAAATCTGAGGAAGACGATTATAACTCCAACGATGACCTTCCACTTCAAAGTATGGTCACAACAAACTCGTCCAAAAATAAAGATAGTGAAAAACGGAAATTAGAAGATGATAAAGCCTCTGATAACGAAGGAAGTATACCTTTAGATAAACGTCCAAGGTCATTGACATCAAAATATCCGAAGGTGCCCACAAGGAAGCTGGTATTGAAGCCACAAAGTGTTAATGGTGCTACCACATCTCGACGGCCAATAGTTGTTGGTGTCAAGGGTCAAAACATGCCATTATCAATGTCGAAAGTGCAACAGCTGATGCGTGAGAGAGACCCCACTTACATGACAGAGACAAACCTACTCACAATCGTTGAGAATTCTTACATATGCCCTTTCAAATGTAGACACAACCACCTACTCTGCTACTATTGTGGACAAAACTTCTCAGACCCCGCAGAACTGAGAACCCATACCCTAGCTGGACATCATCCCAAGAAATTTAAGGTCACCGAACACAAGAACATGGTCAAAATGGACATCACTCGCATTGATTGTAGGCTGTGTGACGAGAAAATTGATGACCTAGAAGAATTTAAACGCCATGTGACGACTACGCATAAGAAAACTTACTACCCGGAGTATAAAGATTCAATCCTTCCGTTCAAATTAACCAAAGATCAGTTGAAGTGCGCGATATGTGACGTTCTTTTCCCTTATTTCCATGCGTTGAATAAGCATATGAACGAACACTATAGCAATTATGTTTGTGAAACTTGTGGGTTAGGTTTTGTTGATAAAGGTAGATTTGTCATGCATCAGCAGAGGCACGAAGAGGGCGACTATCCTTGTGAAGTTTGCGGGAAAGTGTTTAAAGCGTCATATAATCGAGATTTGCACATAGACAGAGTTCATAAGAAACGCGGGAGGGTGTACTGCCCGAAATGCGATGTAAAATTGATGTCCTACCCTCAGAAGTTGAAACATTTGGTGGAGGTACACGGGGAAGCACCAATGAGCTTACCTTGCAGTATGTGTGAAAAGATATTTGAAACGAGAAGGATGCTGACTATACATAAGCGAAAGGATCATTTGAAGGATTACAGTATAAAAGGTTTTCTTGAAAATTTTAATGACGCTTATAAGTTTAAATCACTAAGTGTAGCAGTGGTTCGAAACCAAACTCAATATCACAAAAATACATCACAAATGTCCAGGTTTAAATTACTCCATTTGTTTTTAAAAGAGTTCAGTGACAAACACACATACATAAAAATTTTACATACTATCATTCTGTCTTCTAGGTACGAATGTCAAATTTGCGGCCAGAAATTCTTCACTCGCTTCGCTCTTACCAACCACATGCCAACGCACACAGGCGAGAGGAACTTCAAGTGTAAAGTCTGCGAGAAAACGTATCCGAGGCTCAAAACCCTCAAAGACCATATGCGGATACATACAAACGACCGTCGATACCGTTGTCATGTGTGTGAAAAACAACATAAGCTATCAGACTCAAAGGAAAGCGACAAAAACCAGAAATCCCTCCATAATTTAAATGTTCTAGTAGAATACTCCTATGCCTGTCCATTTGACACATCCTTCAGTGACTACTTCTGTAGCTATTGCAGACAAAAGTTCACAGACCCTAACAAGTTGAGAGACCATACATTGACACACAATCCCAAAGAGTTTAGCCTAGTTTTGAAGAATACTAATACGACAAAGAAATTACAAGTAGACATCTATAGGATAGACTGCCGGTTGTGTACAGAAAGTATCAACGATGTGGAGACCTTTAAAAAGCATATAGTAACTCATGGGAAGGAAATCCATTCGGTAACAGATGAGTTCCTGAAATTCAGACTAACGTACAACTTAAGCTGTATTGAGTGTGGGGCTACATTTAGCTTCTTCCATGCCCTCAAGAAACACATGGCAGAACATTTTGGCACTTGCATCTGTGATGTGTGCGGAGCTCATTACTTCGAGGAGAGAATGCTGTTGCTTCACCAGAAGACACATCAACGGAGTGAGGAGTCGTACACTTGCAAGGATTGTGGAAAGAGCTTCAAGTCGAAGTATACGAGATATATTCATATTGCCAGGATGCATAAGAAAGAGGCAGCATACCAGTGTAATAAGTGTGATGAATTGTTCTTCTCATATATGGTCTTTGATAGCAGTGCAAAAAGTAGGGGTTTCCAACAATTTTGGAGACATCTAGAACCGAATAATAAGTACAGACATATGATGGAAGCCCATGGGGAAGAGCGAATGTTCCAATGTGACCATTGCGACCGAGTCTATGACAGCAGGAAGTCTCTCCGAGAACACAACAGACGTCTGCACCTCAGAATCATGAAGCACCAGTGTGATCTATGTGACAAACGGTTCTACCTTCCTTGCAGGCTCCGGGAACATATGTCAAGTCATACTGGAGAGAGGAACTTCAGATGCGAATACTGTGGCAAGAGCTTTCCCCGTCTCAGAGGACTGAAAGTCCATATGCAGTCTCACAGTAGTGATAAGAAGTACAAATGTATGATGTGTAATGCGTCGTTCACACAGAATGTCAACTTGAAGAATCATATGAAACGGCAGCATCTTAGCTTAGTAGCCGCTCAAATGGATGAGAGTTATCATGAGTAG
Protein Sequence: MSVIKGKGPVFDPGLCRCCGGMRKCRVLNVEYESSGQTEVYCDMIMDCFGLLLAHLDGKPTERLICAMCVQRLREAFNFRQQVLRCEEIFIQMKMDAANAEARGVSGAVEIPKIELEVKLEPMESYQSPCRDALADDASDYQCNVKSEEDDYNSNDDLPLQSMVTTNSSKNKDSEKRKLEDDKASDNEGSIPLDKRPRSLTSKYPKVPTRKLVLKPQSVNGATTSRRPIVVGVKGQNMPLSMSKVQQLMRERDPTYMTETNLLTIVENSYICPFKCRHNHLLCYYCGQNFSDPAELRTHTLAGHHPKKFKVTEHKNMVKMDITRIDCRLCDEKIDDLEEFKRHVTTTHKKTYYPEYKDSILPFKLTKDQLKCAICDVLFPYFHALNKHMNEHYSNYVCETCGLGFVDKGRFVMHQQRHEEGDYPCEVCGKVFKASYNRDLHIDRVHKKRGRVYCPKCDVKLMSYPQKLKHLVEVHGEAPMSLPCSMCEKIFETRRMLTIHKRKDHLKDYSIKGFLENFNDAYKFKSLSVAVVRNQTQYHKNTSQMSRFKLLHLFLKEFSDKHTYIKILHTIILSSRYECQICGQKFFTRFALTNHMPTHTGERNFKCKVCEKTYPRLKTLKDHMRIHTNDRRYRCHVCEKQHKLSDSKESDKNQKSLHNLNVLVEYSYACPFDTSFSDYFCSYCRQKFTDPNKLRDHTLTHNPKEFSLVLKNTNTTKKLQVDIYRIDCRLCTESINDVETFKKHIVTHGKEIHSVTDEFLKFRLTYNLSCIECGATFSFFHALKKHMAEHFGTCICDVCGAHYFEERMLLLHQKTHQRSEESYTCKDCGKSFKSKYTRYIHIARMHKKEAAYQCNKCDELFFSYMVFDSSAKSRGFQQFWRHLEPNNKYRHMMEAHGEERMFQCDHCDRVYDSRKSLREHNRRLHLRIMKHQCDLCDKRFYLPCRLREHMSSHTGERNFRCEYCGKSFPRLRGLKVHMQSHSSDKKYKCMMCNASFTQNVNLKNHMKRQHLSLVAAQMDESYHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -