Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold174:232390-238625[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.026 1.6 9.3 0.5 1 23 367 389 367 389 0.97

2 20 7.8 4.8e+02 1.5 0.6 1 13 395 407 395 408 0.85

3 20 1.8 1.1e+02 3.5 1.4 1 13 416 428 416 429 0.88

4 20 5.5e-07 3.4e-05 24.0 1.2 1 23 431 453 431 453 0.98

5 20 5.4e-05 0.0033 17.7 1.0 1 23 459 481 459 481 0.95

6 20 0.00097 0.06 13.8 0.8 1 23 487 509 487 509 0.96

7 20 0.0036 0.22 12.0 3.9 1 23 515 537 515 537 0.97

8 20 4e-05 0.0025 18.1 1.3 1 23 543 565 543 565 0.98

9 20 0.0018 0.11 12.9 3.6 1 23 571 593 571 593 0.96

10 20 0.052 3.2 8.3 1.5 2 23 600 621 599 621 0.97

11 20 8.1e-05 0.005 17.2 4.7 1 23 627 649 627 649 0.98

12 20 9.8e-06 0.00061 20.1 1.5 1 23 655 677 655 677 0.97

13 20 1.2e-05 0.00071 19.8 3.2 1 23 683 705 683 705 0.98

14 20 1e-06 6.3e-05 23.1 0.7 1 23 711 733 711 733 0.99

15 20 0.0087 0.54 10.8 0.2 1 13 739 751 739 752 0.93

16 20 0.053 3.3 8.3 0.8 2 23 798 819 797 819 0.96

17 20 3.5e-06 0.00022 21.5 5.6 1 23 845 867 845 867 0.97

18 20 3.9e-05 0.0024 18.2 1.3 1 23 873 895 873 895 0.98

19 20 1.5e-06 9.3e-05 22.6 1.5 1 23 901 923 901 923 0.99

20 20 0.054 3.4 8.3 0.7 1 13 929 941 929 942 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.026	1.6	9.3	0.5	1	23	367	389	367	389	0.97
2	20	7.8	4.8e+02	1.5	0.6	1	13	395	407	395	408	0.85
3	20	1.8	1.1e+02	3.5	1.4	1	13	416	428	416	429	0.88
4	20	5.5e-07	3.4e-05	24.0	1.2	1	23	431	453	431	453	0.98
5	20	5.4e-05	0.0033	17.7	1.0	1	23	459	481	459	481	0.95
6	20	0.00097	0.06	13.8	0.8	1	23	487	509	487	509	0.96
7	20	0.0036	0.22	12.0	3.9	1	23	515	537	515	537	0.97
8	20	4e-05	0.0025	18.1	1.3	1	23	543	565	543	565	0.98
9	20	0.0018	0.11	12.9	3.6	1	23	571	593	571	593	0.96
10	20	0.052	3.2	8.3	1.5	2	23	600	621	599	621	0.97
11	20	8.1e-05	0.005	17.2	4.7	1	23	627	649	627	649	0.98
12	20	9.8e-06	0.00061	20.1	1.5	1	23	655	677	655	677	0.97
13	20	1.2e-05	0.00071	19.8	3.2	1	23	683	705	683	705	0.98
14	20	1e-06	6.3e-05	23.1	0.7	1	23	711	733	711	733	0.99
15	20	0.0087	0.54	10.8	0.2	1	13	739	751	739	752	0.93
16	20	0.053	3.3	8.3	0.8	2	23	798	819	797	819	0.96
17	20	3.5e-06	0.00022	21.5	5.6	1	23	845	867	845	867	0.97
18	20	3.9e-05	0.0024	18.2	1.3	1	23	873	895	873	895	0.98
19	20	1.5e-06	9.3e-05	22.6	1.5	1	23	901	923	901	923	0.99
20	20	0.054	3.4	8.3	0.7	1	13	929	941	929	942	0.92

Sequence Information

Coding Sequence: ATGCAGTGTGTTGTACCCACTTGCAACTATGGTGATTCAAGCCAATTTTCATCACAAGGAGCAGTATATTTCAAATTCCCATTGGAGCCATCTCTCCGGGCTGCATGGCTGGAGATACTGCACAAGGTAGACTGGGAACCCAAAGACGATAGTGTGGTTTGCTCCAAACATTTCTTGCCTGAGGATATAGTGGAGAGCAGTAATGGGAAGATGACACTTCGGGAGGATGCAATGCCTGCTGTCAATGTGCAGGTGTGCAGGATATGTTTTGCCATGGATTGCAGGCTCTACCCATTGACAGAATACAATACTTTATATGAGGCATATGAAATATTGACAGGTTTATTGATACAAGGGGACACTATACCACCATATGTTTGCAACAAATGTGCTCATCAACTGTTGATATGTGCTCGCCTCAGGACCAAGAGCTTAGAGGCACATTCTGTTCTAGCAGAAATCTCTACAAAACATAATTGCATAACAAGAGAATCTATACAATCAATACCTAGGGACAAGAACACACTTCTGTCAGCTGACTCCGACCAATCTGAATTTTATGACATAGACATGGAAATTTCTGAGATGGAAAATATACATAGCACTGGACAAACAGATGAACAGCCTACACCCAGCCCATTAGGAGACGTTACCGTTGACTGTGTTAAGATGGAAAGTGATGAGGGAGTTGATAATGACATTTTCAATGGCCAAAGGTTACCTGATAATGTCATAGTGCATATTATTGTATCGGAAGAAAGTTTGCCAGAAGAACCTGATACAGGGTACTGTAAAGAAGAAAACAATGATTCAATGAAACTCCATTTTGATGAGGAAATAGAGAATAGTAATATTTTAAAAGACACATTGGAAGAAATTTTAATCATAAGTTTTGACTATGGGTATAATGTTCTTACTTCCTTGTATATACACAATTTTGTTTTAACAAGTGAGAATCTTGTAGTAGGTGAAGATAGACGAAATAATGAACAGGGAATTCGAAATCAAGATGACGAGAAATTACCAGACCGAATAAATGAGAAGGTGATTGATACGGGCCGAAAACCGGAAGTTGAAGGTATCTCACTTAGTAATAAATTTTCCTGCTCCTTGTGTGATTTTGAAACTAACGTTGAAACTCAGTTGAAAAGCCATTTAAAAGCTCATGCCGCGACTAAATCGTACGACTGTTCCTTGTGTGGCTACAAAACGGTTCATAAAAGAATACATTCAGGAGAAAAACCATATTCTTGTAGTACATGTCATAAGGCGTACATTAAAAAGAAACCATATATTTGTGACGTATGTAAAAAGGGATTTACTCGCAAGGATACTCTAAAAGTACATATGAAAAATCACACTGGTGAAAAACCGTATTTGTGCGATGTTTGTAATAAAAGTTTTGGGGAGAAATATACTCTTAAAAAGCATTATTTAATACATTCGGGTGAGAGACCATATTTATGCCACATTTGTGTCCAATCATTTATTGCTAAAGAAAATTTAGATGAACATTTAAGAAAACATTCTTGTATAAAACCATTTTCGTGTGACTTCTGTAACAAAAAATTAATTAGTAAAACATCTCTACAAAATCATTTGTGTCTGCATTCTAATAAAAGACCGTATTCATGTAATGTTTGTAGCAAAGCATTTGTTACCAAAGCTAGATTAAAGATTCATTTTAAAACGCATTCTGATGATAAGCCATACTGTTGTGAAGTTTGTAGAAAAAGTTTTAGCGCAAAAGCTAGTCTGAAGTCTCATAGTTTTACACATTCTATTGAAAGGCCACAATCTTGTCAAACTTGTAGCGAAAAGTTCCTCAATAAAGATTCTTATAAAGAGCATTTGAAAATACATCCTGTTGAGAAACCATATTCATGCAACTTGTGTCACCTGAAATTCAGTGTAAACGCGTGTCTAACTAAACATATGCGAGTACATTTTGCAGATAAATCATATTCGTGTAGTTTCTGTGACAAAACTTTTATTTCTCAAAGTTATCTAACACAACATTCGTTGATTCATTCTAGTGAGAAACCATATTCGTGTAATATCTGCAACAAAGAATTCACTCTTAAAAGCTATCTACGAAAACATAAGCTGAAGCATACTAGGGAAAAACCATTTACTTGTGATATATGTAAAAAATCGTTTATTGCCAAAGATTATTTACTAATACATATGCGAACACATACTGGTGAGAGACCGTATCCCTGTCATATTTGTAACAAAGCATTCAGGAGAAATCTTCGATCAGGAGAGATTACCCAAGAACCAGTGATGAACAACATACGAGTGGAAGTGACGATAGTCACAGAGAACATGGAATCCACCAATATACATGAAAACCAGGATGGTCTGAGTGAGCAAGATAATAATAAATTATCCTGTGATAAATGCCCATTTCAAACTACCAGTAAAATTCAGATGACAAGTCATCTAAAAGCTCACGCAGCATCTAATTCATACAACTTTCATAAGAGAAGCATGGCATGGCATAAAAGAGTACATTCTGGAGAAAAACCACATTCCTGTGATAGATGTCATAAAACATTTAGCCAAAAAAGTAGTCTAATAGTACACATGAGACAACATACCGGTAAAAAACCGTATTCGTGCAACGTATGTAAAAGAAAATTTTCTGAAATAAGTACCTTAAGACGACATTTATCAATACACACAGGTGAAAAACCATATTCCTGTGATGTTTGTAGTAAAAGATTTCGTCAAGTAGGTCAGTTGAAAAAACATTTACGTATGCATGCTGGAGAAAAACCGTATACCTGCGATTACTGTAAAAAGGCATTTATAAGAAATCCTATTCCTGTGAACTATGTAAAAAAGTATTTAGTCAAAGAAGTTGTCTACGTGTACATTATAAAAAACATGTTATAG
Protein Sequence: MQCVVPTCNYGDSSQFSSQGAVYFKFPLEPSLRAAWLEILHKVDWEPKDDSVVCSKHFLPEDIVESSNGKMTLREDAMPAVNVQVCRICFAMDCRLYPLTEYNTLYEAYEILTGLLIQGDTIPPYVCNKCAHQLLICARLRTKSLEAHSVLAEISTKHNCITRESIQSIPRDKNTLLSADSDQSEFYDIDMEISEMENIHSTGQTDEQPTPSPLGDVTVDCVKMESDEGVDNDIFNGQRLPDNVIVHIIVSEESLPEEPDTGYCKEENNDSMKLHFDEEIENSNILKDTLEEILIISFDYGYNVLTSLYIHNFVLTSENLVVGEDRRNNEQGIRNQDDEKLPDRINEKVIDTGRKPEVEGISLSNKFSCSLCDFETNVETQLKSHLKAHAATKSYDCSLCGYKTVHKRIHSGEKPYSCSTCHKAYIKKKPYICDVCKKGFTRKDTLKVHMKNHTGEKPYLCDVCNKSFGEKYTLKKHYLIHSGERPYLCHICVQSFIAKENLDEHLRKHSCIKPFSCDFCNKKLISKTSLQNHLCLHSNKRPYSCNVCSKAFVTKARLKIHFKTHSDDKPYCCEVCRKSFSAKASLKSHSFTHSIERPQSCQTCSEKFLNKDSYKEHLKIHPVEKPYSCNLCHLKFSVNACLTKHMRVHFADKSYSCSFCDKTFISQSYLTQHSLIHSSEKPYSCNICNKEFTLKSYLRKHKLKHTREKPFTCDICKKSFIAKDYLLIHMRTHTGERPYPCHICNKAFRRNLRSGEITQEPVMNNIRVEVTIVTENMESTNIHENQDGLSEQDNNKLSCDKCPFQTTSKIQMTSHLKAHAASNSYNFHKRSMAWHKRVHSGEKPHSCDRCHKTFSQKSSLIVHMRQHTGKKPYSCNVCKRKFSEISTLRRHLSIHTGEKPYSCDVCSKRFRQVGQLKKHLRMHAGEKPYTCDYCKKAFIRNPIPVNYVKKYLVKEVVYVYIIKNML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -