Lacc006363.1
Basic Information
- Insect
- Lerema accius
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold2590:48678-51988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.048 2.9 8.5 1.7 2 23 223 244 222 244 0.96 2 16 0.00026 0.016 15.6 1.0 1 23 251 273 251 273 0.99 3 16 1.3e-05 0.00082 19.6 0.7 1 23 279 301 279 301 0.98 4 16 1.4e-05 0.00084 19.6 5.0 1 23 307 329 307 329 0.98 5 16 5.4e-05 0.0034 17.7 3.6 1 23 335 357 335 357 0.98 6 16 5.7e-05 0.0035 17.7 0.2 1 23 363 386 363 386 0.97 7 16 7.8e-05 0.0048 17.2 2.3 1 23 391 413 391 413 0.98 8 16 0.057 3.6 8.2 0.2 2 23 458 479 457 479 0.96 9 16 0.13 7.8 7.1 0.5 1 23 485 507 485 507 0.98 10 16 0.005 0.31 11.5 0.4 1 23 544 566 544 566 0.98 11 16 3.4e-05 0.0021 18.4 3.5 1 23 572 594 572 594 0.98 12 16 2.6e-06 0.00016 21.9 0.6 1 23 600 622 600 622 0.97 13 16 6.7e-07 4.1e-05 23.7 3.3 1 23 627 649 627 649 0.98 14 16 1.6e-06 0.0001 22.5 2.7 1 23 655 677 655 677 0.98 15 16 0.015 0.94 10.0 0.9 3 23 686 706 684 706 0.89 16 16 8.2e-05 0.0051 17.2 0.2 1 21 712 732 712 733 0.94
Sequence Information
- Coding Sequence
- ATGTTTCTTTTATTCTTGACTTTTATCTTTTTAATTCAATTTTTTTTACAATCGTGTTTTTCCCAGATGTGTAGAATATGTTTGGTGTCAGGCAGCAAAATGTACTCGATGACAGCTCTTACAAGGTTAAATGAGGCTTATGAAAGTTTAACTGGACTCTCAACAGCAGACGAGGAGCACTTGCCACGGTCGCTGTGCTCCGAGTGCACCGGCCGACTGATGACCTGCGCTCGCTTCAGACACAGGAGTCTGCGAGCACACTTAATGCTGCTGGATGTCTTCAAGAGACACGGCCATATTGAAATGGATAACAAAATAAACCATAAACAAAATAGTGAAAATACAACAAATTATATGGTTGTAAGAGAGATTAAAAAGGAAAAAGATGACACAAATAATAAAGATTTTGATGCTAGTACATCTGAATTATATAGAATTCTTACAGAGGGTGTGATCAATCGAAACAATCTTAGTGGGTGTTCATTAAAATTAAAGAAAGATAATGTTAGTGATGTTAATAAAAATAAAGACAATATTAATGAAAATGTGAATGTAATTACGTCTAATCAGAACGTGGTTTCTTCTAAACTGGTGGAAGATACTGAAATAAAGAAAAAATATGTTGATTTGAAAACGGCTGGTGAACCTTCCACAGATGATACATTACATTGTGACATATGTCATTATAAAACTGTTAATGATATTCAGTTAATGGAACATTTGAAAGTGCATGCAGCATTAATGCAGTCGTACTACTGTGATATGTGTGATTATAAAACAGCAAGCAAAGTGAAACTTATCTATCATATCCGGAGACATTTTAATAAAAAAGTATATTCGTGTGATATATGTAAAAAGGCTTTTAGTGATAAAAGTACTCTAGGATTACACTTTAAAGTACATTTCGATGAAAATTGTTATAAATGTGAGGTTTGCAATAAATCCTTTCATAGGAGGGCACATTTAAAAAGCCATTTACTATTACATTCTGGGGAGAAACCTTATTCATGTCATCTTTGCACTAAGGTTTTTGGGCGTGTAGAGCATTTACGATCGCATTTGAAAGTACATTCTGATGAGAAACTATATTCCTGTAATGTTTGCAGGAAAGCGTTCAGGGTACCGCGGTTGCTGGAATCACACTTATTAAAAATCCATTCCATTGCAAATTATTATTGCGATATTTGTGAAAAGCCGTTTAGATATAAGAAGCATATAGTACGCCACTTAATTAGACATTCTGATGGCTCTCTTCGTACACAAGAAGTGAGTCAACAAGCAAAGAGAGTGAAAAAGACGCACGATAACGACATGAACATTGACAGACTACAGATAGCAGAAACTGGTGAAGGACTCTCCACAGATATGTTGCGTTGTGACATATGTCATTATGAAACTGCCAGTGATATTCAGTTAATAGAACATTTGAAAGCGCATTCGAAAAATAAGTCTTACTACTGTGATCTATGTGTGTTTGAAACAGGAAGTAAGAATAGACTTATAACCCATATTCAAACACATGAAACACATTTGGGTGAAAAACTATACTCCAATGATGTTTGTCAAGAAAAAGTAAAACAGAAAAATCGACTTAAATCAAGTTATACAACACATTCTAATAAAAATCTATATTCTTGTACAATCTGTAAAAAGGCATTCTTGGAAGAGATTATGCTAAAAACGCATTTAAAAATACATTCTGAAAAGAAACCATATTCATGTCACATTTGTAGGAAGTCGTATGTCCGGAAAGACCGACTAAAATTACATTTATTAACACATTCTAAGAAGAAACCATATTCATGTGTGATCTGTAAAAAAATCTTTACGCAAAAAAGTTTGTTGAAATCACACATCATAGAACATTCTGAACGTGTTTATTCGTGCGATGTTTGCGAAAAGTCATTTAAAAGAAAGGAGCATTTATCAAACCACCAAAAGGTACATACTGGTGAGAAACCATATTCGTGTAAGGTTTGTAAGAATTCGTATTCGCGAAAAGATAATCTCCAAAGACATTTAAAGATGCACATTGAAAAGGAGGATGCGCTTTCGTGTATTGTATGTAGAATGACGTTCAAAGACAAATATAGTCTCAGATCACATTCATCAATACATTCAAACAAGAAACCATATTCCTGTAAAGTATGTAAGAAAGCATTCAGTCTACCAAGTTTTTTGAAAGCACATTTAATAATGGAGTCTTGTTTAATTTAA
- Protein Sequence
- MFLLFLTFIFLIQFFLQSCFSQMCRICLVSGSKMYSMTALTRLNEAYESLTGLSTADEEHLPRSLCSECTGRLMTCARFRHRSLRAHLMLLDVFKRHGHIEMDNKINHKQNSENTTNYMVVREIKKEKDDTNNKDFDASTSELYRILTEGVINRNNLSGCSLKLKKDNVSDVNKNKDNINENVNVITSNQNVVSSKLVEDTEIKKKYVDLKTAGEPSTDDTLHCDICHYKTVNDIQLMEHLKVHAALMQSYYCDMCDYKTASKVKLIYHIRRHFNKKVYSCDICKKAFSDKSTLGLHFKVHFDENCYKCEVCNKSFHRRAHLKSHLLLHSGEKPYSCHLCTKVFGRVEHLRSHLKVHSDEKLYSCNVCRKAFRVPRLLESHLLKIHSIANYYCDICEKPFRYKKHIVRHLIRHSDGSLRTQEVSQQAKRVKKTHDNDMNIDRLQIAETGEGLSTDMLRCDICHYETASDIQLIEHLKAHSKNKSYYCDLCVFETGSKNRLITHIQTHETHLGEKLYSNDVCQEKVKQKNRLKSSYTTHSNKNLYSCTICKKAFLEEIMLKTHLKIHSEKKPYSCHICRKSYVRKDRLKLHLLTHSKKKPYSCVICKKIFTQKSLLKSHIIEHSERVYSCDVCEKSFKRKEHLSNHQKVHTGEKPYSCKVCKNSYSRKDNLQRHLKMHIEKEDALSCIVCRMTFKDKYSLRSHSSIHSNKKPYSCKVCKKAFSLPSFLKAHLIMESCLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -