Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold9230:22031-25005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.2e-06 0.00044 20.5 0.7 1 23 156 178 156 178 0.95

2 17 0.11 7 7.3 5.4 3 21 185 203 183 205 0.93

3 17 6.5e-05 0.004 17.5 4.5 1 23 210 232 210 232 0.97

4 17 2.8e-05 0.0017 18.6 1.0 2 23 238 259 238 259 0.98

5 17 0.00034 0.021 15.2 3.7 1 23 265 287 265 287 0.96

6 17 4.3e-05 0.0026 18.0 4.1 1 23 293 316 293 316 0.93

7 17 0.0044 0.27 11.7 1.7 2 23 323 344 322 344 0.97

8 17 0.0017 0.1 13.0 1.0 2 23 348 368 347 368 0.96

9 17 4.3e-05 0.0026 18.0 0.4 1 23 374 396 374 396 0.96

10 17 0.00017 0.01 16.2 0.8 1 23 401 423 401 423 0.97

11 17 0.0013 0.083 13.3 1.4 1 23 451 473 451 473 0.95

12 17 0.00012 0.0077 16.6 0.3 2 20 480 498 480 500 0.95

13 17 0.00079 0.049 14.1 1.0 1 23 519 541 519 541 0.99

14 17 0.00046 0.029 14.8 0.4 1 23 554 576 554 576 0.97

15 17 1.9e-05 0.0012 19.1 1.6 1 23 584 606 584 606 0.96

16 17 2e-07 1.3e-05 25.3 1.4 1 23 612 634 612 634 0.98

17 17 0.037 2.3 8.8 1.2 1 16 640 655 640 656 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.2e-06	0.00044	20.5	0.7	1	23	156	178	156	178	0.95
2	17	0.11	7	7.3	5.4	3	21	185	203	183	205	0.93
3	17	6.5e-05	0.004	17.5	4.5	1	23	210	232	210	232	0.97
4	17	2.8e-05	0.0017	18.6	1.0	2	23	238	259	238	259	0.98
5	17	0.00034	0.021	15.2	3.7	1	23	265	287	265	287	0.96
6	17	4.3e-05	0.0026	18.0	4.1	1	23	293	316	293	316	0.93
7	17	0.0044	0.27	11.7	1.7	2	23	323	344	322	344	0.97
8	17	0.0017	0.1	13.0	1.0	2	23	348	368	347	368	0.96
9	17	4.3e-05	0.0026	18.0	0.4	1	23	374	396	374	396	0.96
10	17	0.00017	0.01	16.2	0.8	1	23	401	423	401	423	0.97
11	17	0.0013	0.083	13.3	1.4	1	23	451	473	451	473	0.95
12	17	0.00012	0.0077	16.6	0.3	2	20	480	498	480	500	0.95
13	17	0.00079	0.049	14.1	1.0	1	23	519	541	519	541	0.99
14	17	0.00046	0.029	14.8	0.4	1	23	554	576	554	576	0.97
15	17	1.9e-05	0.0012	19.1	1.6	1	23	584	606	584	606	0.96
16	17	2e-07	1.3e-05	25.3	1.4	1	23	612	634	612	634	0.98
17	17	0.037	2.3	8.8	1.2	1	16	640	655	640	656	0.94

Sequence Information

Coding Sequence: ATGCCTGCTCTCCTGCTCCCGGTTCAGATCCAGGTGTCTCCGAGCTCATCTTGTTATGATGGAAGTCTATCAGAAATAACATTACAATCAATACAGGCAACTAATGCAAAGCAGAATCTACTGATATCAGATTTAATAGATGATATTGATAACATTGACTTAGATACTGCACTGTACAATGATAAGAAACTCTCTGAGGAAGACACATTTCTTAGAACTACTGTAACGGCTAAAGATATTAAAGTTGAAGCCGATATTACTAACAAGATGATTAATAATTTAAATAATGAATCATTCAATTTATCGTCACATGAAGACACTGTAGCATCAACGGTTATTAAGACAGAAAGTGATGATAACACAAAACAGGATACAGATGTAACCAACATACTTAATACAGATACACGTAATAATAATAAGATAATTGATGATGCAACTGATAAGGATGTTAATGATGACAATAATTTTTTATGTGAGATTTGTTCCAAATCTTTCCGGCTGAAGACTGAACTAGAACGACACATTGATACACATGTTGTTGACAAACATCTGTGCCATGAGTGCGGGGGAATATATAAAGATTTCAAATCTCTGAAACTGCATATGAGATGTCACAAACAAATCCTATATTCTTGTGATATTTGTTCAAGAACATTTAGCACTAGAAAACAATTTCAAGTACATCAGTCGCATCACTCCAAACATAAACCCACTTGTGATTATTGTGGTAGGGAGTTCATCGGGAAGCATCAATTAATAATGCATTTACAAACGCATACTGTTAAAAAATCGTACATATGTGATTATTGTTCTAAAAGTTATTCTCATAAACATAGGCTAATCAATCATTTGGTAATACATTCTGAGCGAAAAACATTTCTATGTCACGTTTGTGGTACTAAATTTAAGCATTATAGCACTCTGAAACAGCATATAAAAGCAATTCACAAACACAATAGAGTTATTTCATGTCATATCTGTTCACTAAAATTAGAGTCGACTAGAGAATTAACATCACATCTAAGAACACATCTTAAAGTCCCATGTGATTATTGTAATAAAAAGTTCACTAAACGTATGTTACCGAATCATTTACGGACACATACAGGTGAAAAACCATATTCGTGTACATTGTGTGAAAAAAGATTTGCTACTGAGAGCTCTGTCAATCGACATATAGAAGACCATTCAAATGCAAAATATATATGTGATTATTGTAACAAAAAGCTTGCAACAAAAGAACGGCTAAAGTTACATTTGCGGGGACACGAAAAAACAATATATTCAAGCGAGGTTTGTAGTAAAAAATATGTAGAAAGCGATTTGACTAAACATACGGGTGAAAAACCATATTCATGTATAAATTGTAGAAAATTATTCGGCTCACGTTCTTTGCTGAAAATTCATATGAAAACTCACATGAAAATAATATCTAATACATGTAAGAACTGTGGCCGGGGATTTAAAACAAAGATTGGTTTGAACCGGCATTTAGATTTGAAATTTAAAAAATATATACATCTCCATCATAAGTTACAAAGAGGTGAAGAGTCATATTCATGTACTGTTTGTGGGGCCTCATATTATATATATCGGAGCTTAATAAAACATTTCCGAACACATAAGATAGATTTTAAGTTGGCTCCGGGTGACAAATTGCATGTATGTGATGTTTGTAAACAGGCGTTCAAAGAACTCGCGGCTTTGGAGGAGCACAAGCGATCACACGCGCCGTCTAAACCGAAGCCCTTCATCTGTGACATTTGCAACAAATCATTTCCCCACAAGTTCAACATATACAGACACATGGTCATACATTCTGATAAGAAACCATATTCCTGTAAAATATGCGGGAAATCGTTCAAAAGAAAGAATGATTTGGATCTGCATCAGAAAATACATTCTGGGAAGAAACCATATTCGTGCGATATTTGCAAACTGTGCTTCGTTCGTAAAGAATATCTGGGCTCGGTTCTCTCACAGTGCAGCACGCTGGTCGAGTGA
Protein Sequence: MPALLLPVQIQVSPSSSCYDGSLSEITLQSIQATNAKQNLLISDLIDDIDNIDLDTALYNDKKLSEEDTFLRTTVTAKDIKVEADITNKMINNLNNESFNLSSHEDTVASTVIKTESDDNTKQDTDVTNILNTDTRNNNKIIDDATDKDVNDDNNFLCEICSKSFRLKTELERHIDTHVVDKHLCHECGGIYKDFKSLKLHMRCHKQILYSCDICSRTFSTRKQFQVHQSHHSKHKPTCDYCGREFIGKHQLIMHLQTHTVKKSYICDYCSKSYSHKHRLINHLVIHSERKTFLCHVCGTKFKHYSTLKQHIKAIHKHNRVISCHICSLKLESTRELTSHLRTHLKVPCDYCNKKFTKRMLPNHLRTHTGEKPYSCTLCEKRFATESSVNRHIEDHSNAKYICDYCNKKLATKERLKLHLRGHEKTIYSSEVCSKKYVESDLTKHTGEKPYSCINCRKLFGSRSLLKIHMKTHMKIISNTCKNCGRGFKTKIGLNRHLDLKFKKYIHLHHKLQRGEESYSCTVCGASYYIYRSLIKHFRTHKIDFKLAPGDKLHVCDVCKQAFKELAALEEHKRSHAPSKPKPFICDICNKSFPHKFNIYRHMVIHSDKKPYSCKICGKSFKRKNDLDLHQKIHSGKKPYSCDICKLCFVRKEYLGSVLSQCSTLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -