Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold558:38860-42745[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.4e-05 0.0046 17.3 4.1 1 23 200 222 200 222 0.98

2 16 2.2e-05 0.0014 18.9 2.0 1 23 229 251 229 251 0.97

3 16 0.00017 0.011 16.1 2.2 1 23 257 279 257 279 0.97

4 16 2.7e-07 1.6e-05 25.0 4.5 2 23 285 306 284 306 0.97

5 16 0.00025 0.016 15.6 3.3 1 23 312 334 312 334 0.99

6 16 1.5e-05 0.00094 19.5 2.6 1 23 340 362 340 362 0.95

7 16 1.1e-05 0.00071 19.8 1.6 2 23 369 390 368 390 0.97

8 16 0.00055 0.034 14.5 1.0 3 23 398 418 397 418 0.96

9 16 1.3e-05 0.00081 19.7 4.2 2 23 425 446 424 446 0.97

10 16 0.024 1.5 9.4 7.6 1 23 452 474 452 474 0.98

11 16 4e-05 0.0025 18.1 1.1 1 23 480 503 480 503 0.98

12 16 1.1e-05 0.0007 19.9 1.6 1 23 509 531 509 531 0.98

13 16 1.6e-05 0.001 19.4 4.1 1 23 537 560 537 560 0.97

14 16 0.00055 0.034 14.5 1.5 1 23 564 586 564 586 0.97

15 16 9.7e-06 0.0006 20.1 4.4 1 23 592 614 592 614 0.99

16 16 0.00056 0.035 14.5 0.1 1 20 620 639 620 641 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.4e-05	0.0046	17.3	4.1	1	23	200	222	200	222	0.98
2	16	2.2e-05	0.0014	18.9	2.0	1	23	229	251	229	251	0.97
3	16	0.00017	0.011	16.1	2.2	1	23	257	279	257	279	0.97
4	16	2.7e-07	1.6e-05	25.0	4.5	2	23	285	306	284	306	0.97
5	16	0.00025	0.016	15.6	3.3	1	23	312	334	312	334	0.99
6	16	1.5e-05	0.00094	19.5	2.6	1	23	340	362	340	362	0.95
7	16	1.1e-05	0.00071	19.8	1.6	2	23	369	390	368	390	0.97
8	16	0.00055	0.034	14.5	1.0	3	23	398	418	397	418	0.96
9	16	1.3e-05	0.00081	19.7	4.2	2	23	425	446	424	446	0.97
10	16	0.024	1.5	9.4	7.6	1	23	452	474	452	474	0.98
11	16	4e-05	0.0025	18.1	1.1	1	23	480	503	480	503	0.98
12	16	1.1e-05	0.0007	19.9	1.6	1	23	509	531	509	531	0.98
13	16	1.6e-05	0.001	19.4	4.1	1	23	537	560	537	560	0.97
14	16	0.00055	0.034	14.5	1.5	1	23	564	586	564	586	0.97
15	16	9.7e-06	0.0006	20.1	4.4	1	23	592	614	592	614	0.99
16	16	0.00056	0.035	14.5	0.1	1	20	620	639	620	641	0.93

Sequence Information

Coding Sequence: ATGAAAAATACAAATCACTCGAAACCTGCACTATCCAGAGATATTGCTGTCTGTGATACTGATGTTAGGATTGAGAATGTTTATGTTGACACTATTATTAATACTGAAGATATAATGGATAAACACTTGGTCTGTAGCCGGACATTGCCCCAACATGTCATTGATGACATTAAGACTGAACAAGATGATGTAGTGGACCAGGACCTGACTGATACTGAACACACTACTGATTGTGACGCGGAGTGTCCATCAAACACTACCAATGATTTATTCACTGATGATGTGAAAAAACAACCTTATCCTACCTACCTGGAGTTTCTTTTGGACTATGCATCCGTGGTGCTGGTGACTTCCTCCCGGATCGCAGCAGAGCTGAGCGGCAACGCAGTCTTTGCAAAGAGGAGAGCTCCCACATCAAGGAGGCTTGTCTCTGTCACTGAGAATTTAGCTTCAACGCCCCACTTGAGATTAATAGTTCAATGGTCTATCCGGCTAGGTTATCCCTACTGTGAGGCAGACAGAGGTCTCTCTGGCGCCCCATTTGTTAAAAAACCTAGATTAATAGAACATTTGAAAGTACATTCTGATGAGAAACCATTTACATGTGAAGTCTGCCATAAATTGTATAAGACAAAAAGGACTCTTAACATACATATGACGACACATACAAGGGGAAAAAAGGATTTTTTTTGCGAAGTTTGCAACAAAGCGTTTCATGAAAAAACGAATCTAACAAAGCACATACTTATACATTCTGATGAGAAACCCTTTTCATGTGATATTTGTGATAAATCGTTTCATCTTAAACAAAAACTGACAATACATTTAGAATCACACGCCGATGAGAAGCTTTCCTGTAAACTCTGCTCGAAGACATTTGTCCATAAATCGAACCTTACGACCCACATGCGCACACACCGGGGTGAGAAACCATATTCCTGTAAAGTCTGCCAAAAACAATTTTACTACGCCAGTACTTTCGCGACTCATAAAAAGACACACATTGACGTGAAACCGTTCTTGTGTTATATTTGTCAGAAAGCATTTGTTAGTAAAAGTTATCTCGAGCGCCATCTGTGCTCTCACTCCGGCGCGCGGCCGGTCTCGTGTGAACTCTGCTCCAAGACATTCACTCACGTCAGCGGGCTCAAGAGCCACATGAAGATACATTCCGGTGAGAAACCACAAGCGTGTAATATTTGCGATAAAGTCTTCCTTCGTAAAGAACACTTGAAGTTACACGCACTGAACCATTTAGACTTGAAGCTACTCACTTGTGAAGTGTGCCACAAGTCGTATAGTAATAAAAAGACTTTCAAAGCTCATCTTAAAACACATTTCGGTGTAAAAAACTTTTCGTGTTCTATCTGTCACAAAGCTTTCTTACATCGATGTACTCTCAGAAAACATTTGATATCACATTCCGGTGAGAAGCCATACTCCTGTGATGTCTGTCACAATAAATTTGCTTCGCCATACAATCTTATCATTCACAAAAAAACGGTACATTTGGGTGAAAAACCATTTTCGTGTGAAGTATGTAAGAAATCGTTTGGTCGCAAACCGGATCTGATACAGCATTTACACACACATTCAAATGAAAAGCATTTTGCGTGTAAACTGTGCCCCAAGAAATATAGTCAAAAATCTGGGCTAAGACACCATCGGAAGACGACTCATATAAAACCACACAGTTGTGATATTTGTTACAAAGAATTCGATATTAAACGAGACCTAGCATCACATTTGAAGACACATTCTGTGAAGAAACCATATTCGTGTGAAGTGTGTCACAATACATTTTCTCGGAGGAGAAGTTTTGAGCGGCATATGATGACACATTCAGGTGAGAAGCCATACTCTTGCGATGTTTGTGGGAAAGGATTTATACGGAAAAATGTTTTAATAACCCATTTTAAGGGGGTTTGTGGTGTCGGGGCCGCTGACGACCGGTCATTATTTCTATTGCTGAACATAGTATACATACAATGTTATTGCAATCTGTCCAAGTAA
Protein Sequence: MKNTNHSKPALSRDIAVCDTDVRIENVYVDTIINTEDIMDKHLVCSRTLPQHVIDDIKTEQDDVVDQDLTDTEHTTDCDAECPSNTTNDLFTDDVKKQPYPTYLEFLLDYASVVLVTSSRIAAELSGNAVFAKRRAPTSRRLVSVTENLASTPHLRLIVQWSIRLGYPYCEADRGLSGAPFVKKPRLIEHLKVHSDEKPFTCEVCHKLYKTKRTLNIHMTTHTRGKKDFFCEVCNKAFHEKTNLTKHILIHSDEKPFSCDICDKSFHLKQKLTIHLESHADEKLSCKLCSKTFVHKSNLTTHMRTHRGEKPYSCKVCQKQFYYASTFATHKKTHIDVKPFLCYICQKAFVSKSYLERHLCSHSGARPVSCELCSKTFTHVSGLKSHMKIHSGEKPQACNICDKVFLRKEHLKLHALNHLDLKLLTCEVCHKSYSNKKTFKAHLKTHFGVKNFSCSICHKAFLHRCTLRKHLISHSGEKPYSCDVCHNKFASPYNLIIHKKTVHLGEKPFSCEVCKKSFGRKPDLIQHLHTHSNEKHFACKLCPKKYSQKSGLRHHRKTTHIKPHSCDICYKEFDIKRDLASHLKTHSVKKPYSCEVCHNTFSRRRSFERHMMTHSGEKPYSCDVCGKGFIRKNVLITHFKGVCGVGAADDRSLFLLLNIVYIQCYCNLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -