Lacc007950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lerema accius
Gene Symbol
-
Assembly
None
Location
scaffold558:51301-62192[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0052 0.32 11.5 0.6 2 23 165 186 164 186 0.96
2 26 9.2 5.7e+02 1.3 6.0 1 23 192 214 192 214 0.95
3 26 1.4e-07 8.9e-06 25.8 2.3 1 23 220 242 220 242 0.99
4 26 4.3e-06 0.00026 21.2 3.5 1 23 248 270 248 270 0.98
5 26 2.4e-06 0.00015 22.0 1.3 1 23 276 298 276 298 0.99
6 26 0.62 38 5.0 2.0 1 14 304 317 304 318 0.90
7 26 1.2e-05 0.00073 19.8 3.8 1 23 325 347 325 347 0.96
8 26 8.6e-06 0.00053 20.2 3.4 1 23 353 375 353 375 0.97
9 26 1.8e-06 0.00011 22.4 1.7 1 23 381 403 381 403 0.98
10 26 3.3e-07 2e-05 24.7 2.9 1 23 409 431 409 431 0.98
11 26 5.8e-08 3.6e-06 27.1 0.9 1 23 437 459 437 459 0.98
12 26 7.7e-06 0.00048 20.4 2.3 1 23 507 529 507 529 0.98
13 26 4.3 2.7e+02 2.3 0.5 9 23 536 550 534 550 0.91
14 26 4.5e-06 0.00028 21.1 0.6 2 23 558 579 557 579 0.96
15 26 0.00017 0.011 16.1 1.4 2 23 586 607 585 607 0.97
16 26 2.3e-06 0.00014 22.0 3.7 1 23 613 635 613 635 0.99
17 26 4e-05 0.0024 18.2 7.2 1 23 641 663 641 663 0.98
18 26 7.6e-06 0.00047 20.4 0.9 1 23 669 691 669 691 0.98
19 26 7e-06 0.00044 20.5 3.5 1 23 697 719 697 719 0.98
20 26 2.3e-07 1.4e-05 25.2 1.2 1 23 725 747 725 747 0.99
21 26 3.8e-06 0.00023 21.4 4.0 1 23 753 775 753 775 0.99
22 26 3e-06 0.00019 21.7 4.6 1 23 781 803 781 803 0.99
23 26 2.7e-05 0.0017 18.7 6.6 1 23 809 831 809 831 0.98
24 26 9.1e-07 5.6e-05 23.3 1.7 1 23 837 859 837 859 0.97
25 26 1.4e-06 8.5e-05 22.7 1.7 1 23 865 887 865 887 0.98
26 26 0.17 10 6.7 0.5 1 13 893 905 893 909 0.84

Sequence Information

Coding Sequence
ATGGACAAGAAACTTAAAGCGAATGCTAAAACATGCAAAAAAGACAAGAATTTACCGATTGAACACATAAATGTTGAATGTACTGTTAAAATCGAAAAAGATGATTTTGACCATGTCATTGGGAGTGAAGATGCTATCAATATAACCGATACATTGTTTAAGTGTGATAATGAAGACAGTGTGGCGGGTAAGACGGGAAATACTGAGGGTGTTAGTAACATGACAGTGTGTGTGAGACCGGAGGAGGTAGTGACCAGCGTCAAGATTGAAGTAGACGAGGAAAGTGATAATTGTGATGACAAGTCTAATAATAGTGATCGGGAACAGAGAGACTCTGTTGTAAAATGTGTCTTTAATGCAGTTTCAGATTACTCTTCCGATGACAGTCATTCTTCAGCGGAAACAGGACGGAAAGCGAAAAGGACCAAAAGAGTGAAAAAGTCAAAATCAGAGAGAGCTTTGACACAGCCAACTGAAGGACTCACTAAATTAACATGTACTCTATGTCCGTACAAAACTAGCAAGGAACAACTGTTGAACAGCCATATGAAGGCTCACTCCGCCTCTAAATGTTACAGATGCAACATGTGTAGTTATATCACTGTACACAGATATAGCCTATCTTGCCATTTCAAAATACATACGGGAGAGAAACCATATTCATGTGATCTCTGCAACAAAACATTTAACGTCAAAAGTAGTCTCAGAACGCACATGAGAACACACACCGGCCACAAACCCCACACATGCGAAATTTGTAATAAAACCTTCACAGAAAGAAGTAGTCTTAAAACACACGCGAAAACACATTCGGGTGAAAAACCATATACATGTGACATTTGTAAGAAAACGTTTATAACTAGAGATAAACTGAGCATACACTATCGAATACATTCTGGTGAAAAGCCATATTCATGCGAGTTCTGTTACAAGACATTTAATCAAAAGGCGACACATTCGGGTATTAAACCGTATCTGTGTTACGTTTGTAATAAAACATTTAATAGAAGCGGGAGTTTAAAAACGCACATGCACACACATTTTGGTGATAAACCACATTCATGTACCTTGTGCGAAAAAACATTTACTGAGAAAAGAGGATTAACGAGACACATGATGACACACACAGGAGAACAACCGTACACATGTGAGATCTGTTTCAAAACATTCACCCGCCAATACGGACTAACAACGCACTGGCGGCTACATTCCGGTGAGAAACCATTTCCCTGTGACGTTTGCAATAAAATTTTCAACCAAAAGTCTCACCTGACAAAACATAGGAGGATACATACGGGTGAAAAGCTATATTCATGCGAAGTGTGCAACAAGGCTTTTACTGAAAAATCAAATCTTACGAAGCACTTGAGGATACACAGAACATATCAGGATACCGGCTATGTTTGCTTGGGAACAGGGCAACACTCAGCATGTGAGGAGTTATCTTCGGAGGAGACTCAACAAGCTGTAGTCACAACCAAACGACGACTGAAGAAGACACAAACAAAAGAAAATAAGTTTATATGTGACATCTGTGACAAGCCATTCAAACAAAAAAGATACCTTGTGGAACACCACAAGACACATTCGGGAGAGAGACCATTTACATTTAAAAAGAAAAGACATCTCGTAGACCACGCTAAAGGACATAATAAAATAGAAACATTAGTTATGTGCAAATTCTGCCCCAAAGCATATAGTTCTAAAAGCAGTCTTATCAACCATATGAAGTTACATTCGGAAGAGAAACCTATTCCATGTCATGTTTGTAGCAAAGAATTTAAAAGTAAATTGCTTTTTATAGAACATTTAAGGACACATTCAGATGTGAAACCATTTACCTGTGAATTGTGTCACAAAGCATTTCGTATAAAAAGTAGTCTTACGAACCACATGAAGACACATACTGAAAAGAAATTATTTTCATGTCATGTTTGTGACAAACAATTCAAACAAAAAAGTCATTTTGCAGAACATTTTAGGACACATTCAGGAGAGAGACCCTATTCCTGTGAAGTGTGCCTTAAAGCATTTAGTGTAAAAAGTAGTCTTACGTACCATATGAAGTCACATACAGGGGAAAATCCATATTCATGCAATATTTGTGATAAGGAATTCAAACAAAAAACGCATTTTGTGGAACATTATAGGATACACTCAGGAGAAAAGCCATATACTTGTGAGATATGCAATAAAGCATTTAGTGTGAAGAGCAGTCTTACGTACCATATGAAGTCACATTCAGGGGAAAAACCATATTCGTGTAATATTTGTGACAAAGAATTCAAACAAAAAAGTCATTATGCAGAACATTTTAGGACACATTCAGGAGAAAAACCATATACCTGTCAATTGTGCGACAAACATTTTAGTGTAAAAAGCAGTCTAACATACCACATGAAGACGCATTCAGGAGAGAAATCATTTTCATGTCATATTTGTGACAAAAAGTTTATACAAAAAAGTCATTTTGTAGAACATTTTAGGACACATTCAGGAGAAAGACCATTTGCATGTGAAGTGTGTCATAAAGTATTTAGCGCAAAGAGTAATTTGACATCCCATATGACGACACATTCAGAGGAAAAACCATATGCATGCACCATGTGTGACAGGGCTTTTAAGAAGAAAAAATATCTTACAGAACACATCAGGACACATACGGGAGAGAAACCGTATCGGTGTGAAGTGTGTAATAAAACGTATAATGTCAAATTAAATTTTTCTTTGAGAAAAACAATTTTGCCACAAAACAATGAACAATGTAATATATTTTGTTCTGTAATAATAAAATCAACGTATCTTAATTACGTCACTGTAGTCTTTCATTACATTCGAAAATGTACCTTTTGGTCTTTCAGACAATATTTTGTGTATTTAAAATACAAACCCCACTCCAGGGCCAGGAGTACCCAGGTAACATCTGCAGCTTCCTCGATGCTGCACGAGTTCATACACGACGGTGACCACTTACCATCGGATGCGCCGGATACCTGTCTGCTCGTCTACAATATAAAAAACAAGGTGTTGGTCGGGAGGAAAAAAAATGTCATTATACTGACACTAGCTAAATTGGCACATTTGCAAAAAATGCGACTGTGCGATATAGTCAGGGGACCCAAGGGATCATATCGCGCGATAATTTAG
Protein Sequence
MDKKLKANAKTCKKDKNLPIEHINVECTVKIEKDDFDHVIGSEDAINITDTLFKCDNEDSVAGKTGNTEGVSNMTVCVRPEEVVTSVKIEVDEESDNCDDKSNNSDREQRDSVVKCVFNAVSDYSSDDSHSSAETGRKAKRTKRVKKSKSERALTQPTEGLTKLTCTLCPYKTSKEQLLNSHMKAHSASKCYRCNMCSYITVHRYSLSCHFKIHTGEKPYSCDLCNKTFNVKSSLRTHMRTHTGHKPHTCEICNKTFTERSSLKTHAKTHSGEKPYTCDICKKTFITRDKLSIHYRIHSGEKPYSCEFCYKTFNQKATHSGIKPYLCYVCNKTFNRSGSLKTHMHTHFGDKPHSCTLCEKTFTEKRGLTRHMMTHTGEQPYTCEICFKTFTRQYGLTTHWRLHSGEKPFPCDVCNKIFNQKSHLTKHRRIHTGEKLYSCEVCNKAFTEKSNLTKHLRIHRTYQDTGYVCLGTGQHSACEELSSEETQQAVVTTKRRLKKTQTKENKFICDICDKPFKQKRYLVEHHKTHSGERPFTFKKKRHLVDHAKGHNKIETLVMCKFCPKAYSSKSSLINHMKLHSEEKPIPCHVCSKEFKSKLLFIEHLRTHSDVKPFTCELCHKAFRIKSSLTNHMKTHTEKKLFSCHVCDKQFKQKSHFAEHFRTHSGERPYSCEVCLKAFSVKSSLTYHMKSHTGENPYSCNICDKEFKQKTHFVEHYRIHSGEKPYTCEICNKAFSVKSSLTYHMKSHSGEKPYSCNICDKEFKQKSHYAEHFRTHSGEKPYTCQLCDKHFSVKSSLTYHMKTHSGEKSFSCHICDKKFIQKSHFVEHFRTHSGERPFACEVCHKVFSAKSNLTSHMTTHSEEKPYACTMCDRAFKKKKYLTEHIRTHTGEKPYRCEVCNKTYNVKLNFSLRKTILPQNNEQCNIFCSVIIKSTYLNYVTVVFHYIRKCTFWSFRQYFVYLKYKPHSRARSTQVTSAASSMLHEFIHDGDHLPSDAPDTCLLVYNIKNKVLVGRKKNVIILTLAKLAHLQKMRLCDIVRGPKGSYRAII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-