Lqua067289.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptura quadrifasciata
Gene Symbol
-
Assembly
GCA_963675555.1
Location
OY776680.1:93659981-93675384[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.14 26 7.7 3.3 3 23 367 387 366 387 0.97
2 25 4.8 9e+02 2.8 3.7 1 23 427 449 427 449 0.98
3 25 0.031 5.8 9.7 2.0 1 23 458 480 458 480 0.97
4 25 0.082 15 8.4 1.9 1 23 514 536 514 536 0.96
5 25 0.71 1.3e+02 5.4 1.7 1 23 545 567 545 567 0.94
6 25 4.3 7.9e+02 3.0 7.6 1 23 576 598 576 598 0.96
7 25 0.00055 0.1 15.2 1.2 2 23 626 647 626 647 0.98
8 25 7.2 1.3e+03 2.2 5.1 1 23 656 678 656 678 0.96
9 25 1.5 2.7e+02 4.4 3.0 1 23 687 709 687 709 0.98
10 25 0.066 12 8.7 2.8 1 23 718 740 718 740 0.97
11 25 0.0041 0.76 12.5 1.7 1 23 749 771 749 771 0.98
12 25 1.8 3.3e+02 4.1 2.8 1 23 780 802 780 802 0.96
13 25 0.027 5 9.9 3.9 1 23 811 833 811 833 0.98
14 25 0.022 4 10.2 3.1 1 23 842 864 842 864 0.98
15 25 0.013 2.5 10.9 1.8 1 23 871 893 871 893 0.98
16 25 1.8 3.3e+02 4.2 0.2 1 23 902 924 902 924 0.96
17 25 0.0098 1.8 11.3 1.3 1 23 933 955 933 955 0.96
18 25 3.4 6.3e+02 3.3 6.0 1 23 964 986 964 986 0.97
19 25 0.053 9.8 9.0 0.9 1 23 995 1018 995 1018 0.97
20 25 0.01 1.9 11.2 4.1 1 23 1027 1049 1027 1049 0.98
21 25 0.95 1.8e+02 5.0 4.4 1 23 1058 1080 1058 1080 0.97
22 25 0.0051 0.94 12.2 3.2 1 23 1089 1111 1089 1111 0.97
23 25 0.016 2.9 10.6 4.6 1 23 1120 1142 1120 1142 0.99
24 25 0.97 1.8e+02 5.0 9.3 1 23 1151 1173 1151 1173 0.96
25 25 0.33 60 6.5 2.1 1 20 1182 1201 1182 1203 0.95

Sequence Information

Coding Sequence
ATGGAATGTCAAGAAAGAATATGCAGAATTTGtttggaaaaatgtaataactttaAAGTTGTAGATGGAAATACAAAAAACCTCTTGGATATACTTCATCTGAAATTAGACTTTACTGTTACACAAGGTCCAGTGATATGTACGAATTGCACAGAAATACTTATACATTGCTTCGATTTTAAAACGGCATGCTTGAGTATGCACAATTACATTCTTGCGTTTGTGAGCAAAAAGGACGAAGTCAAACTAAATCTGAAGGATGTCTATCTATATAGCAAAGATGTAACTGGTACTGGTATTCCAGAGAATCACGACGTATGTGTATTTTGCATGAGTTTAGCGAAAAAATGTTCTACTCTATCGGTTGATGTTGAAGAGGGAGATGTGATACTAAAGAAAATGATAGAAGAATGTCTTCCAGAATTAGATTTAAGTACCTTCAACAAGCCTGTAATCTGTACACCATGCCATGAATCTCTAGAGAAATGTTTCCGTTTTGTGATGAATTGTTTGACTGTAGAAGAGAAAACTAAGAAATATTGTGAAACTCtagatataaaaattaaaagtcaaatagAACTAAGCAGTTTAGTACAGTTTACAATGGGCGATCTAATAAAAAGTGAGCCAGGTGGTATCTCAGCTGATATAATCAAAGTAGAGCCACAATTTTGTGAGGCTAAAGAAAATCCAGAAGGGGAAGAAATTGGCAACGGAGGCGACATAATTAAATTAGAACATCCATTCTTTGACGGCAGCAACAATTCTAAAGAGAATGTTGAAAATGAAAGTTTTATGAATAGAGAAGGTCCGATACTTAACAATGAACATCACGTAACTCAAAAAAATATGTTGGCATGTGAAGAAGAAAGCAATAAGCTTGGATCCattaaaaaagaagaaatattttgTGTAAACCGAACTGAACAAATAGAAGGAAACCTTGTTAAAATGGAGGACGAGAAATTTTTGTTTCacgaagaaattgaaataaaaacagatgaCCAGGATGTCAGTGGGTTAGAAGATGGTGTTATTTTTCCACACCCTCAAGTTGCTACTGGGTCTCGTGGAAAgcagaaaaaaaaattggaacaTTGTAAATACTGTCCATTTCAGACAACAAATGAATATTACTTCCAGAGCCATTTGCTGAAACATAAGAATCCTTCGGACATAACAATacacaaatgtgactcttgttcatttgagTCAAAATGTGGCCAGTGCCTCAATAAGCACGTGTTCCTCCACAAGGACTCTTTAGAAGAAGCATTGTACAAATGTGATTTCTGTTTGTTTCAGACAGAACATAAAAATACTCTCGATAGTCATTTGCTAAAGCATAAAGACCCTTCGAATCTAACCATGTATAAATGTGGcgcttgttcatttcagacaaaaagAAAGGGTTACCTTAAGAGACATTTGGTAAAACATGCATACACATGTGACGCTTGTTCCCTTGAagcaaaatgtaaaaatgaaCTCAAGAAACCTTTACAGACGAATCTGAAGGATTCTGCAGAGACAGTAATTTACAAGTGCGACAGATGTTCATTTGGGACAAAAAATAATCGGGCCCTCAAAAATCATTTTCTAttgcataaggatccttcagaagtaacaatgtataaatgtgactCTTGTCCATTTGAAACGAAACTTAAGCGTAGCTTCCAAAGGCATTCACTGGGACATAAAGATCCTTCTGAAGTAACAATATACGAATGCGATTGTTGTTCATATCAGACGAGACATAAACGTAATCTCAGACGCCATTcgctgaagcataaggatccttcagaagtaacaaaaATGAAGCGTAACCTTCAAAGCCGTTTGCAGAAACATCCCTCAAAAGTAACTATGCGCAAATGTGATTATTGTCCATTTCAAACAAGAGATAGATCTAACTTTAACAGACATTTGCTagtacataaggatccttcagaagtaacaatataTGAATGTGATTGTTGTTCCTATCAGACGAAACATAAACCTAATCTCAGAATTCATTcgctgaagcataaggatccttcagaagtaaagATGTACAAATGCGACTCTTGTTCGTTTGAAACAAGAATGAGGCGTAGCTTCCTAAGCCATTTGCAGAAACATGAGGATCCCGCAAAAGTAGCTATACACAAATGTGACTATTGTTCATATCAAGCAAGAGATCGATATAGCCTTAACAGTCATTCGTTGatgcataaggatccttcagaagtaacaatgtacaaatgtgactcttgtacATACGAGACAAAACgtaaaaattacttaaaagtCCATATACTCTTGCATAAAGATCCCTCAGAAGTAACAACGTACATATGTGAGCTTTGTTCGTATCAGACGAAATTTAAGCGTTATTTCACAATACACTCGCTGAAACATAAAAATGCTTCAACAGTAGCATTGTACAAATGTGACCATTGTTCGTATCAAGcgataaataaatattacctCAAAAAGCATTCGCTAATGCATAAGGAACCTTCAGAGGTAACATTGTACAAATGTGAGTTTTGTTCATATCGGGCAATGTATAAGAGTCACCTCAAACGACATGCGCTAGTGCACAAGAATTCATCAGAAatatacaaatgtgactcttgtacATATGAGACAAAATATAAGAGTAAGCTCAAACTACATGTGCTAGTGCATAAGAATCCATCAggagtaacaatgtacaaatgcgactctTGTCCATATTGGGCAAAATATAAGGCTAAGCTAAAAGAACATGTTCTAGTGCATAAGAATCcatcagaaataacaatgtacaaatgtgactcttgtacATATGAGGCAAAGCGTAAATATGATCTCAAAAAGCATGCGCTattacataaggatccttcagaagtaacaatgtatatATGTGAGTATTGTTCATATGAGACGAAATTTAAGCATAGATTTACAAAACATTCGCTGAAGCATAAGGACCCTTCAAAAGCGGCAATATACAAATGTGACTATTGTTCATTTCAAACGAATCAAAAAGACGGTGTCAAAAGCCATGTATTAATGATGCATAAGGATCATTCAGAACTACTAAtgcacaaatgtgactcttgctcATATCAGTCAAAATATAAAGATGATCTTAAAAGACATCTATtaacacataaggatccttcagaagtaacaatataCAAATGCAACTCTTGTTCGTTTCAAACAAAAGTTAAGCGTTACTTCCGAAGACATTTGGGGAAACATAAGgctccttcagaagtaacaatgtacaaatgtgactattGTACGTATGAGTCAAAACGTAAAGATTACCTGAAATATCATACACTATTGCATGAGGATCCTTTAgaggtaacaatgtacaaatgcgattCTTGTTCATATCAAACGAAAATGAAACGTAACTTCCGAAGACATTTGCAGACACATGTGGATCCTTCAAAAGTAGCAATGCACAAATGTGGCCAttgttcatttcaaacaaaacatAAATTCAACCTTAAGAAACATTCATTaatacataaggatccttcagaagtaacgaTGTACCAATGTCACTCGTGTTCATATCAATCAAAATTTAAAGATGGTTTAAAGCAGCATTTAGTGAAGTGTAAGCAGCCTAGATCATTCACATTCCTTCCAAGTGAAGACTATAAAAAATCTTAA
Protein Sequence
MECQERICRICLEKCNNFKVVDGNTKNLLDILHLKLDFTVTQGPVICTNCTEILIHCFDFKTACLSMHNYILAFVSKKDEVKLNLKDVYLYSKDVTGTGIPENHDVCVFCMSLAKKCSTLSVDVEEGDVILKKMIEECLPELDLSTFNKPVICTPCHESLEKCFRFVMNCLTVEEKTKKYCETLDIKIKSQIELSSLVQFTMGDLIKSEPGGISADIIKVEPQFCEAKENPEGEEIGNGGDIIKLEHPFFDGSNNSKENVENESFMNREGPILNNEHHVTQKNMLACEEESNKLGSIKKEEIFCVNRTEQIEGNLVKMEDEKFLFHEEIEIKTDDQDVSGLEDGVIFPHPQVATGSRGKQKKKLEHCKYCPFQTTNEYYFQSHLLKHKNPSDITIHKCDSCSFESKCGQCLNKHVFLHKDSLEEALYKCDFCLFQTEHKNTLDSHLLKHKDPSNLTMYKCGACSFQTKRKGYLKRHLVKHAYTCDACSLEAKCKNELKKPLQTNLKDSAETVIYKCDRCSFGTKNNRALKNHFLLHKDPSEVTMYKCDSCPFETKLKRSFQRHSLGHKDPSEVTIYECDCCSYQTRHKRNLRRHSLKHKDPSEVTKMKRNLQSRLQKHPSKVTMRKCDYCPFQTRDRSNFNRHLLVHKDPSEVTIYECDCCSYQTKHKPNLRIHSLKHKDPSEVKMYKCDSCSFETRMRRSFLSHLQKHEDPAKVAIHKCDYCSYQARDRYSLNSHSLMHKDPSEVTMYKCDSCTYETKRKNYLKVHILLHKDPSEVTTYICELCSYQTKFKRYFTIHSLKHKNASTVALYKCDHCSYQAINKYYLKKHSLMHKEPSEVTLYKCEFCSYRAMYKSHLKRHALVHKNSSEIYKCDSCTYETKYKSKLKLHVLVHKNPSGVTMYKCDSCPYWAKYKAKLKEHVLVHKNPSEITMYKCDSCTYEAKRKYDLKKHALLHKDPSEVTMYICEYCSYETKFKHRFTKHSLKHKDPSKAAIYKCDYCSFQTNQKDGVKSHVLMMHKDHSELLMHKCDSCSYQSKYKDDLKRHLLTHKDPSEVTIYKCNSCSFQTKVKRYFRRHLGKHKAPSEVTMYKCDYCTYESKRKDYLKYHTLLHEDPLEVTMYKCDSCSYQTKMKRNFRRHLQTHVDPSKVAMHKCGHCSFQTKHKFNLKKHSLIHKDPSEVTMYQCHSCSYQSKFKDGLKQHLVKCKQPRSFTFLPSEDYKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-