Lqua067280.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:93561043-93578587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.6 1.4e+03 2.2 3.9 3 23 362 382 360 382 0.96 2 14 0.84 1.6e+02 5.2 5.6 1 23 422 444 422 444 0.98 3 14 0.026 4.9 9.9 2.3 1 23 453 475 453 475 0.98 4 14 0.0013 0.24 14.0 2.0 1 23 509 531 509 531 0.98 5 14 0.48 89 5.9 6.7 1 23 540 562 540 562 0.99 6 14 0.00019 0.035 16.7 0.9 1 23 571 593 571 593 0.99 7 14 0.46 85 6.0 2.1 1 23 602 624 602 624 0.98 8 14 0.16 29 7.5 4.5 1 23 633 655 633 655 0.96 9 14 0.69 1.3e+02 5.5 6.9 1 23 664 686 664 686 0.95 10 14 0.31 58 6.5 6.0 1 23 695 717 695 717 0.95 11 14 0.0005 0.092 15.3 3.7 1 23 726 748 726 748 0.98 12 14 0.004 0.74 12.5 4.9 1 23 757 779 757 779 0.98 13 14 0.23 43 6.9 3.2 1 23 788 810 788 810 0.98 14 14 9.8e-05 0.018 17.6 3.1 1 23 819 841 819 841 0.99
Sequence Information
- Coding Sequence
- atgatgGAATATCAACAAAGCATATGCAGACTTTGTTTGGAAAAATGTGACAACTTTAAAGctctaaatgaaaatataaaaaacgcCTTGGATATACTTCTTCTAAAATTAGACTTTACTGTAATACAAGATCCAGTGATATGTAAAAATTGCACAGAAATGCTTATACAATGCTTCGATTTTAAAACGGCATGTTTGCATAAGCACAATCATATTCTTACGTTTGTAAGCAAAGAGGACGATGTCAAACTAAATCTGAAGGATGTCTACATTAGAAAAGATGTAACTGGTACTGGTGTTCTAGAGGATCACGACGTATGTGGATTTTGCATGAGTTTAACGAAAAAATGTTCTACTCTATCCGTTGATGTTGAAGAAGGAGATGTGATGTTGAAGAAAATGATAGAACAATGTTTTCCAGAATTAGATTTAAGTACCTTCAAGAAGCCTGTAATCTGTACACCATGCCATGAATCTCTAGAGAAATGTTTCCGTTTTGTGATGAATTGTTTGTCTGTAGAAGAGAAAACTAagaaatattgtgaaaatctGAATATAAACATGAAAAGTCAAATAGAACTAAGCAGTTTAGTACAGTTTACAGTGGGCGACATAATAAAAAGTGAGCCAGGTGGTATCTCAGCTGATATAATCAAGGTAGAGAGACAATTTTGTGAGGCTAAAGAAAATCCAGAAGGGGAAGGAATTGGCAACGGAGGCGACATAATTAAATTAGAACATACATTCTTTGACGTTGGCAACAGTATTAAAGACGACGTTGAAAATGAAAGTTTTATGAATATAGACGAAGTTAACAATGGACATCACGTCACCTCAAAAAATATGATGACAAGTGAAGAAGAAAGTAATAAGTTTGGGTCtattaaaaaagaagaaatatttCGTGAAGACCAAACTGAACAAAAAGATGGAAACTTTGTTAAACTGGAGGACAAGACATTTTTATTTCacgaagaaattgaaataaaaacagatgagCAGGATGTCAGCGGGCAGGAAGATGGTGTTCATCCTCAAGTTGTTACTGGGTCTCATGGAAGGCagaaaaaaaagttgaaacaTTGTCGATACTGTTCGTTCCAGACAGGAAATGAATATTACTTCCAGACtcatttgctgaagcataagaATCCGTCAGACATAACAATatacaaatgtgattcttgttcatttcagacaaaatgtAACCAATGCCTCAGTAAGCACATGCTACTGCATAAGGGTTCTTTAGAAGTAACATTGTACAAATGTTACTTTTGTTCGTTTCAGACAGAACATAAAAATACTCTCAATAGCCATTTGCTGAAGCATAAAAACCCTTCGAATCCAACCATGTACAAGTGTGACGCCTGTTCATTTCAGACCAAAAGAATGGACTACCTTAAAAGGCATTTGTTAAAACATATGTACGTATGTGACAGTTGTTCCTTTGAGGCAAAATGTAAAAATGAACTGAAAAGACCTTTACACACGAATCTTAAAGATTCTGCAGAGCCAGTAATTTACAAGTGCGACAAATGTTCATTTGGGACAAAAAATAAACGAGCCCTCAAAAATCATTTGTTATCGCATAAGAATCCTTCAGTAGtagcaatgtacaaatgtgactcttgttcatttgaaacgaaatttaaattacatttcAAAAAACATATGTTGAAACATAaaaatccttcagaagtaacaatgtacaaatgtgactattGTGCGTATGGAGCAAAACGTAAAGATCAGCTAAAAAGTCATATGTTGTCTCATAAAGATCCTTTAGAAGTAACGATGTACAAatgcgactcttgttcatttcaaacaAGTATTAAGCTTTACTTGCAAAAACATTTGCTGAGACATAAGGATCCTTCAAAAGTAGACATGCACAAATGTGACTATTGTTCATTTCAAACAAGAGAGAGATATAGCCTTAAGAAGCATTCGTTgatacataaggatccttcagaagtaacaatgtacaaatgtgactcttgtacATATGAGACAAAACATAAACATTACCTAAAAACTCACTCGCTATTACATaaagatccttcagaagtaacgtTGTACCTATGCAAGTATTGTTCGTATCAGACGAAATTTAAGCGTAATTTCACAAAACATTTTCTGAAACATGAAGATCCTTcaaaagtaacaatgtacaaatgtgactattGTCCGTTTCAAACGAGGCGTAACCATGATCTCAAAAAGCATTTGCTATTGCATAAGGATCCTttagaagtaacaatgtacagaTGTGACTATTGTACGTATGAGACAAAATTTAAACATTACCTAAAAAATCATATGTTATGgcataaggatccttcggaaATAACAATGTTCAAATGCGAGTCTTGTTCATTTGAAACAAAAATTAAGCGTAACTTTAAAAGACATTTGCTGAatcataaggatccttcagaagtaacaatataCAAATGTGACTATTGTACGTATGAGGCAAAACGTAGTGATCACCTAAAAAATCATATGCTATCGCATAAGGATCCTTTACAAATGGAAGATACCTCTAATGCAGGATTTTTGCAGTCTGAAAATTCTAGGGGAATCAGTAGAGTTGCCCCAGAAAATGATTCCATAGATGATCCTAGAATTCACATAAGAGTAGTATGCGGTCAGTGCCGCTTCTTTGTTGACAGAATTGGACACAATACGTAG
- Protein Sequence
- MMEYQQSICRLCLEKCDNFKALNENIKNALDILLLKLDFTVIQDPVICKNCTEMLIQCFDFKTACLHKHNHILTFVSKEDDVKLNLKDVYIRKDVTGTGVLEDHDVCGFCMSLTKKCSTLSVDVEEGDVMLKKMIEQCFPELDLSTFKKPVICTPCHESLEKCFRFVMNCLSVEEKTKKYCENLNINMKSQIELSSLVQFTVGDIIKSEPGGISADIIKVERQFCEAKENPEGEGIGNGGDIIKLEHTFFDVGNSIKDDVENESFMNIDEVNNGHHVTSKNMMTSEEESNKFGSIKKEEIFREDQTEQKDGNFVKLEDKTFLFHEEIEIKTDEQDVSGQEDGVHPQVVTGSHGRQKKKLKHCRYCSFQTGNEYYFQTHLLKHKNPSDITIYKCDSCSFQTKCNQCLSKHMLLHKGSLEVTLYKCYFCSFQTEHKNTLNSHLLKHKNPSNPTMYKCDACSFQTKRMDYLKRHLLKHMYVCDSCSFEAKCKNELKRPLHTNLKDSAEPVIYKCDKCSFGTKNKRALKNHLLSHKNPSVVAMYKCDSCSFETKFKLHFKKHMLKHKNPSEVTMYKCDYCAYGAKRKDQLKSHMLSHKDPLEVTMYKCDSCSFQTSIKLYLQKHLLRHKDPSKVDMHKCDYCSFQTRERYSLKKHSLIHKDPSEVTMYKCDSCTYETKHKHYLKTHSLLHKDPSEVTLYLCKYCSYQTKFKRNFTKHFLKHEDPSKVTMYKCDYCPFQTRRNHDLKKHLLLHKDPLEVTMYRCDYCTYETKFKHYLKNHMLWHKDPSEITMFKCESCSFETKIKRNFKRHLLNHKDPSEVTIYKCDYCTYEAKRSDHLKNHMLSHKDPLQMEDTSNAGFLQSENSRGISRVAPENDSIDDPRIHIRVVCGQCRFFVDRIGHNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -