Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776680.1:83103308-83109498[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3 5.5e+02 3.4 4.1 1 23 270 292 270 292 0.97

2 10 0.037 6.8 9.5 1.9 1 23 301 323 301 323 0.98

3 10 0.0074 1.4 11.6 2.0 1 23 332 354 332 354 0.98

4 10 0.44 81 6.1 3.3 1 23 394 416 394 416 0.97

5 10 0.00026 0.049 16.2 0.3 1 23 425 447 425 447 0.97

6 10 0.062 12 8.7 0.4 1 23 456 478 456 478 0.98

7 10 0.14 26 7.6 0.8 1 23 482 504 482 504 0.97

8 10 1.8e-05 0.0033 19.9 2.8 1 23 513 535 513 535 0.99

9 10 0.012 2.2 11.0 2.4 1 23 544 566 544 566 0.95

10 10 0.0059 1.1 12.0 2.1 1 23 575 597 575 597 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3	5.5e+02	3.4	4.1	1	23	270	292	270	292	0.97
2	10	0.037	6.8	9.5	1.9	1	23	301	323	301	323	0.98
3	10	0.0074	1.4	11.6	2.0	1	23	332	354	332	354	0.98
4	10	0.44	81	6.1	3.3	1	23	394	416	394	416	0.97
5	10	0.00026	0.049	16.2	0.3	1	23	425	447	425	447	0.97
6	10	0.062	12	8.7	0.4	1	23	456	478	456	478	0.98
7	10	0.14	26	7.6	0.8	1	23	482	504	482	504	0.97
8	10	1.8e-05	0.0033	19.9	2.8	1	23	513	535	513	535	0.99
9	10	0.012	2.2	11.0	2.4	1	23	544	566	544	566	0.95
10	10	0.0059	1.1	12.0	2.1	1	23	575	597	575	597	0.97

Sequence Information

Coding Sequence: ATGGAGGGTGAAGAAATGTGTAGATTGTGTTTAAAAGTTATAACCGAAACAAGTTCTGCGAGCTTGGATGATGGAACAACGGATATGCTTTTGTATACCATTCCAGAAATGAATATGaatcacGCAAGCGCTATCAGgaaaatatgtaaacattgtTCTGAAGACCTTCAAATATCTTATGAATTTAAAACTTCTTGTATTGAGCGTAATATGAATTCTAAACAGTGTCAAACAAATATGGTTCAAAATACAGAGTGCACAAGATGCTGCCTTTGTTGGGAGTCTACAGAACTCGATGCTTCAACAGAAACGGTGGTACATGACGATCAGGTTCCTTTGAAACTAATGTTGGAGGAGTGTGCCCCCGAGCTGAACATTAACCTGGAAGATAATTCGACTCGATGTGCAAAGTGTTCGGCCTctctaaaaaatatgtttaacttTATTAGAAGATGCAGGCAGAGTAGTGAGAGGAGGAAAAATATTGTTTCTATCAAATCAGAGCACAGGGAAGAAGACAAGCCATATGCTCCTGACACGGCATTTTGTTTTGTGAAAATTGAAAACCCAGACACAGGGAACGAGGATGGTCACACTACAAAGAACGAGGACGATCTAATTGCTAAAATCAAAAAAGAGCTAAAGGAGGAAAAACACGACCAATTTGAAAGGCTTGAAGACGATGATTTTCTAGTCAAATCTGAGCTTATCCAAGGGGAAGAAAGTGAACAAGAAATAACTGATCACgaaactgacagagcaaaattCGAAGAAACTGAAACAGCAACTACCAAACTGACACCACCATTCAAATGTACGCAGTGCCGTTACAAAACCAGCATATCGCACAGGTACGAGGTACACGTGCTCAAGCACAAAGACCCCTTAAGCATTAAGAAGTTTAAATGCACGATATGCTTGTACGAGGCAAAATATAATTACCATATCCAGGAACATATGTTGATGCACCTTGACCCATCTGAAACCACCATGTTCAAATGTTACAACTGCGCATTCGAGACGAAGCGCAAATCGGCACTCAAAATGCACCTTCTAAGACACAAGGACCCGTCTGAATTGAAGATGTTCAAGTGTCAGTCTTGCTCATTCCAGTCAAAATGGAGGGACTGCCTAAAGAAGCACCAGGCAAGACACAAATCACTGAATGAAGGAATAACGTACAAGTGCGAATTCTGCAGTTACATAACGAATAAGAAGCACTTGCTCAGGCCACATTTGCTGCGTCATAAAAATCCGTCGGACATAACGATGTACAAATGTGAATGGTGCCCGTATGAGGCCAAACAAAAGAGCAACCTTCTAAAGCATGTAGTGAAGCATAAGGAACCTTCTGAGATAACCATGTACAAATGTGACATTTGCTCCTATGCGACAAAATGGCAGAGTGGGATCAGGGCGCATAGAATGAAGCACAAGAAGCGTCACAAATGCGATAAGTGTCCCTTTGAAGCGGACGAGAAGAATGACCTGTTCCAGCACTTAATAAGCCATCCTGAGGACGCCTCTTTGAAGATTTACTCATGCGACCTGTGTTCGTACAGTACCAGGTACAAGACGAACCTGAACAAGCACATGAACACGCACAAGGATTCCTCGGAGGTGCCGACTTTTAACTGCGAGCAGTGCTCGTACGTGACTAAGCACAAGACGGCACTTAAGAACCACGCGTTTGTTCATATGGACACATCTGACATGAAGGTGTTCAAGTGTGAGTTGTGTTCTTACGAGACGTTCCGGAAAAGCTACTTGTTGAAGCATGTGGACAGGCATAAGATGGCTAAGGAGGAGGCGACTGACCTTGAATGA
Protein Sequence: MEGEEMCRLCLKVITETSSASLDDGTTDMLLYTIPEMNMNHASAIRKICKHCSEDLQISYEFKTSCIERNMNSKQCQTNMVQNTECTRCCLCWESTELDASTETVVHDDQVPLKLMLEECAPELNINLEDNSTRCAKCSASLKNMFNFIRRCRQSSERRKNIVSIKSEHREEDKPYAPDTAFCFVKIENPDTGNEDGHTTKNEDDLIAKIKKELKEEKHDQFERLEDDDFLVKSELIQGEESEQEITDHETDRAKFEETETATTKLTPPFKCTQCRYKTSISHRYEVHVLKHKDPLSIKKFKCTICLYEAKYNYHIQEHMLMHLDPSETTMFKCYNCAFETKRKSALKMHLLRHKDPSELKMFKCQSCSFQSKWRDCLKKHQARHKSLNEGITYKCEFCSYITNKKHLLRPHLLRHKNPSDITMYKCEWCPYEAKQKSNLLKHVVKHKEPSEITMYKCDICSYATKWQSGIRAHRMKHKKRHKCDKCPFEADEKNDLFQHLISHPEDASLKIYSCDLCSYSTRYKTNLNKHMNTHKDSSEVPTFNCEQCSYVTKHKTALKNHAFVHMDTSDMKVFKCELCSYETFRKSYLLKHVDRHKMAKEEATDLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -