Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776680.1:82142210-82149806[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0058 1.1 12.0 3.2 1 23 146 168 146 168 0.99

2 14 2.9 5.4e+02 3.5 0.8 1 23 175 197 175 197 0.93

3 14 0.00044 0.081 15.5 3.3 1 23 206 228 206 228 0.99

4 14 0.0057 1.1 12.0 0.9 1 23 237 259 237 259 0.98

5 14 7.1 1.3e+03 2.3 7.0 1 23 268 291 268 291 0.96

6 14 3.9 7.2e+02 3.1 2.0 1 23 302 324 302 324 0.97

7 14 2.4 4.5e+02 3.7 0.5 1 23 333 355 333 355 0.91

8 14 0.15 27 7.6 2.1 1 23 359 381 359 381 0.96

9 14 6.6e-05 0.012 18.1 1.0 1 23 390 412 390 412 0.98

10 14 0.0047 0.87 12.3 2.6 1 23 421 444 421 444 0.94

11 14 0.017 3.1 10.5 6.9 1 23 451 474 451 474 0.96

12 14 0.022 4 10.2 0.5 3 23 485 506 483 506 0.93

13 14 0.0015 0.27 13.8 2.6 2 23 516 537 515 537 0.97

14 14 0.00037 0.069 15.7 1.7 1 23 546 568 546 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0058	1.1	12.0	3.2	1	23	146	168	146	168	0.99
2	14	2.9	5.4e+02	3.5	0.8	1	23	175	197	175	197	0.93
3	14	0.00044	0.081	15.5	3.3	1	23	206	228	206	228	0.99
4	14	0.0057	1.1	12.0	0.9	1	23	237	259	237	259	0.98
5	14	7.1	1.3e+03	2.3	7.0	1	23	268	291	268	291	0.96
6	14	3.9	7.2e+02	3.1	2.0	1	23	302	324	302	324	0.97
7	14	2.4	4.5e+02	3.7	0.5	1	23	333	355	333	355	0.91
8	14	0.15	27	7.6	2.1	1	23	359	381	359	381	0.96
9	14	6.6e-05	0.012	18.1	1.0	1	23	390	412	390	412	0.98
10	14	0.0047	0.87	12.3	2.6	1	23	421	444	421	444	0.94
11	14	0.017	3.1	10.5	6.9	1	23	451	474	451	474	0.96
12	14	0.022	4	10.2	0.5	3	23	485	506	483	506	0.93
13	14	0.0015	0.27	13.8	2.6	2	23	516	537	515	537	0.97
14	14	0.00037	0.069	15.7	1.7	1	23	546	568	546	568	0.98

Sequence Information

Coding Sequence: ATGTTTGACCTCAACCTGACCAACGACCCCGTAGTTTGTCAGCAGTGCATCGACTCTCTCAAGCTCGAGTTTTCTTTTGTGCATGCATGTTTGCAACTAGAagagaaaataaagaattatcGCTCGGTCGAGGCCAACGACAGTGTGGACAAAGTTGACTTGCATAAAGTGATGCAGTACGTGACGACGGTAAAAACTGAGAAAGACTGTGATAAACGGGAAGCCAACCATATGGCGAGGCAAGAAGGTGGAAACTGTAATGTACCTGAAAACGCAAATGTGCAGATGGATGGAGTGAAGATCGAGGAGGCTGAGTTTCAGTCTGAAATGGAATTGGGCGGTGAACAAGAAAAAACTAGACCCTGTCAACCAGCAGAACCATCAGAAGTGCCCCAAATGGTACTAATAAACAGCGTCCAACCAGAACCTAGAACATATACTTGCAAGAAATGTAGTTATCAGTCAAATAGCAACAGGGATCTGAAAATGCACTATCTAACTCACTCAGGCAAGAGAAAAATGTATGAATGCCCATCGTGCCCGTTCATAACCACACACCGGAACGTTATTGACAACCACAAACTAACCCATAAGAGTTTGGAAGAAATAGACTGGTTTCAATGCGACATTTGCACTTACCGCAGCAAGCTCAAAGCGAACCTTAGACACCACCTGCAAACTCACGAGAAGTCAGAGGATATCAAACGATTTAAATGCGAAGAATGCCCATACAGGACTTTACGGCGACGCGATCTGGAACGGCACGTTTTGAAACACAAACAGCCCGGGCAAATTATAATGCACAAATGTGACTTTTGCATGTTTACCACCAAGCATCAACGGTACCTCAAGTATCACATTGACAAGCTGCACCTGAGAACGATCATACCTGGAGAGAAGAAGTTCAGCTGCGCCCAGTGCTCTTTCACTACGAAACTGAAGAGATGTTTGATACCGCACATGCTCATCCATCGAGATCCTACGGAGCTCACAATTTACAAATGCTCTGTCTGCTCTTACCAGGCGAAGTGGAAAGAGAGCGTGAAGAAGCACGAGCTGATCCACAAGAACCTTTACAAGTGCGACAAGTGCGAGTTCGAGACCAACCTTAGACGCTACCTCACCAAACATAAGATCGAGCACAGGTCTTTGGACGATCTGCCCGTCTACAGGTGCGATGAGTGCAATTACCAGACAAGGCGGCGTCAGGGGCTCCAGAACCACATGCTGGTGCACAAGAAAGCCGACGAGGTAAAGATGCACCAATGCGAGCATTGCGCTTATCGGACGAAGAGGTTGTCAGACCTTAGGCAGCACGTCTTGCTCATCCACACCGAAGACATAACGGTGTACAGCTGCGAGCACTGCCCGTATCAGACCAAGCACAAGTACAATTTCAAGCAGCACAACAGGCTGATGCACCGGAGCCCCGCCGAGGTTACGAAGTACGGCTGCGACCAGTGCGACTTTGAGACCAAGTACAAGAGCAGCCTGCAGTCGCATGTGGTGTCCTATCACAAGACGATCGACGAGATCACGATGATAAAGTGCACCGTATGCGATTTTGAGACGAAGCGCAGGGAATGTCTACGGATGCACATGATCACGCACAAGAGCAAGGACGAGCTGGAGATGTTCAAATGCGGCGAATGCTCATACGAGACCAAGTACAAGAGGGCCCTCAAGAAGCACATGACGGTTCACAGGCCGGACGCGCAGAAGGAGACCTTGGTTTATCGTTGCAGTCACTGTAACTTTCGGACGAAATGGACACAGACGATCCGGAAGCATTGGAAGAAGCACGAGGAGGCTGGGGAGGTTGGAGCTGGACTGCCAGGATGGGAGGTAGTTCCGATTATGGGGTTGGTAAAAAATGAAGCTATTGTGGTATAA
Protein Sequence: MFDLNLTNDPVVCQQCIDSLKLEFSFVHACLQLEEKIKNYRSVEANDSVDKVDLHKVMQYVTTVKTEKDCDKREANHMARQEGGNCNVPENANVQMDGVKIEEAEFQSEMELGGEQEKTRPCQPAEPSEVPQMVLINSVQPEPRTYTCKKCSYQSNSNRDLKMHYLTHSGKRKMYECPSCPFITTHRNVIDNHKLTHKSLEEIDWFQCDICTYRSKLKANLRHHLQTHEKSEDIKRFKCEECPYRTLRRRDLERHVLKHKQPGQIIMHKCDFCMFTTKHQRYLKYHIDKLHLRTIIPGEKKFSCAQCSFTTKLKRCLIPHMLIHRDPTELTIYKCSVCSYQAKWKESVKKHELIHKNLYKCDKCEFETNLRRYLTKHKIEHRSLDDLPVYRCDECNYQTRRRQGLQNHMLVHKKADEVKMHQCEHCAYRTKRLSDLRQHVLLIHTEDITVYSCEHCPYQTKHKYNFKQHNRLMHRSPAEVTKYGCDQCDFETKYKSSLQSHVVSYHKTIDEITMIKCTVCDFETKRRECLRMHMITHKSKDELEMFKCGECSYETKYKRALKKHMTVHRPDAQKETLVYRCSHCNFRTKWTQTIRKHWKKHEEAGEVGAGLPGWEVVPIMGLVKNEAIVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -