Lqua033040.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- ush
- Assembly
- GCA_963675555.1
- Location
- OY776676.1:65704448-65727673[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00097 0.18 14.4 0.1 1 20 167 186 167 188 0.95 2 9 0.00019 0.034 16.7 1.5 1 23 233 255 233 255 0.99 3 9 0.0096 1.8 11.3 0.9 3 21 284 302 283 303 0.92 4 9 0.059 11 8.8 2.7 2 21 593 612 592 613 0.93 5 9 0.0073 1.3 11.7 0.0 3 20 652 669 650 671 0.91 6 9 0.84 1.6e+02 5.2 0.1 2 23 707 728 706 728 0.95 7 9 0.012 2.3 11.0 1.3 1 23 734 756 734 756 0.99 8 9 0.017 3.2 10.5 2.7 1 23 813 836 813 836 0.95 9 9 0.52 96 5.8 0.9 2 21 918 937 917 938 0.93
Sequence Information
- Coding Sequence
- ATGTGTGGAGCCGGCGTTACTGCATATCATCAATTAGATACGTCTTACAAGAATAAATGGATCTTGAGTGCCATTACTGAGTTTCCTATTGGAAGGGAGGTGGAAGATTGGACCAGCGATCCAGCAGACACTACCACCTCGGAGAATCCACCTTCAAACTCGCCACCAGCGAAAAGTAAGACTCCTGAACAAGTCTCCGCCGATGAGGATAGAAAGAGCCCACCGAAATCCGAACCAGAGGAAAAAGTACCGCGAATTCGACTAAAAGCCAATCTAGCAACTGACCCTGCTTTGCATCCTCAACTTATTTCATTAACCAATTTGAAAACTGAATTAGAAACAAGCCAGTCGCCAAGCGAATACTTGGCTGCTTTACCTCCAGCAATACAAACTGCTCTTGCATCCAGAGGATTCTTTTTACCGAGCCTCATTCCTGTGCCGGACCCCGCGACTCGACAAACAGATTCGGCAGAACCCAGACAACCAACAGTTCCTGTTTTTCAGTGTCCGCCATGTGGAATACGTTTCTCTTCATTAAGTACACTAGAAGCCCACCAAACATATTACTGTTCGCACAGAGTCAGCAAATCCAGCAATGATGATGACTCTAAGTCAACTGGAGCCGAACCTAGTGGATGTCAGTCGGACGTTGATCCCACAGAACCTAATTCAAAAAATATTCGTACTGGGAAACAATACACTTGCACTCAGTGTTCCTATAGTGCAGACAAAAAAGTTAGTTTAAATCGCCATATGCGTATGCATACCGTATCTCCTAGTCCTAGTCCTTTAAATGTTGCAAACGCTCTAGCAAATGGCGAACCAAGCAGTGATAATCAAGACCGATATTGTGCAGAATGCGATATTAGATTTAGTTCACAAAAGACATTCCGCGCACATAAGATGCACTACTGTAATTCTAGACATATGGCTAAGTCATCGTCAAATCCTGCTACCAAAACAACTTCTAGCTGTACATCTGGATCTTCACCAACTTCTCCTGTAGATACTACATCATGTAGAACTCCGCCATCGCCAACCGCACAAATCCCTCCTCAACAACCTTTTCTAGCGTTACCAACAAATCCCATTATAATTGTGCCATACTCTCTGTTTCGCAGCGCCAGTGTTTTACCTGGTCTTTCATCAGCTGCAGGTCTTCCAAATCCTGACACACCATGTTTCCTTTTACCGAATGGTACTCTTCAGCCGATGACTAGCGCCATAACCACGAATCCCCAGAATCAACAGCCAGAAGTACTTAAAACTGCAAACAAACCCAAAGAATCCTCTGTTATTAGAGAAACATCTTCGGCTCCCTTAGATTTAAGTGTAAGAAAATCTCCAGAACCAAAAGATCTGGTTATCGATCTTGGCGACGATCAAGAAAAAGAAAACCAAAAACGCACTCCCACGCCTGAAAAGATAGAATGTGTACCATCCCTGCATGGATCACCACCATCGACGCCTGTATCTGTGTCAGGCGCATCTCCTTCCTTAAGCATTTCTCCTAAAAGAAAACACGACGAAACTTCAAGGAGCAGCAGTCCTAAACAATTAAGATCTACCCCTAAATCTACAACTAGTGCGGAAAAGGCGAGAACTAGTCCAGAAGCCAATAGTATACCTCAGTTCGATATTCCCTCTTCTTTGCACCCTATTCTAATGCGTGCTGGAACCTTACCGTTATTCCCTCCAGAAGTACAAATGAGACTGTCTGAAATTCCCACTCTTCCACCGGTTATGCCTCAAGTTTTAGTCAAACAGGGGGTCTCTAAATGTAAAGATTGCAATATTGTATTCTGTAAGCTAGAAAACTATGTAATACACAAGAAACATTACTGTTCGGCTAGGACGTTAGAGGAAGATAGTTCAAAGACATCAGGAAGCCCGCCAGTTAGTCCGAGGAGCACCGGAACAACAAGTCCAGCCGGGCAGTACCAACAGTTAATCTGCTTGGCGTGTGGTATAAAGTTCACTTCTCTAGACAACCTCAACGCCCATCAAGCATATTATTGCTTAAAACGAGGGGAAATGGACATAAGAAAGTGCGGGAAATGTAGGGGCATCGCAGAACCAGGTCATCAGTGCGTACCTCACACAGCGTTAGCAGGCTGGAAATGCCCATGTTGTGACGTAATCAGCCCTACTGCTAGTGCAGCGCAAAGGCATATGGATTCCCATACTGGTGTCAAGGCTTATAGGTGTACCATTTGCAGATATAAGGGCAATACGCTTAGGGGAATGAGGACTCACATTCGGATGCATTTTGATAAAAGATCTCCAGATCTTCAGgAGGAAAAATATATCACGTACATCCTCGAAGATGACAGTTCGAATACGATGGAAGTAAGCGTGGCCCCATCGGCTGGAGCCCCCGGCGTTATGGACGATCGGGCGGCATCACCCAGTTCGGAGGGTCATTCTGAACTTCTTCACCATTGCCCGCAGTGTTCGTATAGCTCCACTTACAAAGCAAATGTCCTGAGGCATATAAAACTTGTTCATGAAGTTAACGTCGCTGATGAATCTGTTGTAAATGGGTCTGACGAGAAAAATACGAGGTCGATGCCTATTCTGGAGGAAGACGAAGAGATCGTAGTTAAGAAAGAAGCCATCGAACCAGAAGTCATCATAGCACAAGGCGAAGAACCAGTAATAAAAGAAGAAGCACTAGAACCCTCCACCACACCGAAAAGTAAAAACTCAGACGAGGAAATACTGCAGGAAGCTTCCAAGCCTGGAGCTAAATATTGCAAGTCCTGCGACATCTACTTTAATTACTATTCGACGTTTATAGCACATAAAAAGTTTTATTGTTCAAGTCATGCGGGTGAAATAACCGCAGCTTCAgcgaacaataataataatccaacGACACGTGCCGCCGAAGCGTCCGTTCTATAG
- Protein Sequence
- MCGAGVTAYHQLDTSYKNKWILSAITEFPIGREVEDWTSDPADTTTSENPPSNSPPAKSKTPEQVSADEDRKSPPKSEPEEKVPRIRLKANLATDPALHPQLISLTNLKTELETSQSPSEYLAALPPAIQTALASRGFFLPSLIPVPDPATRQTDSAEPRQPTVPVFQCPPCGIRFSSLSTLEAHQTYYCSHRVSKSSNDDDSKSTGAEPSGCQSDVDPTEPNSKNIRTGKQYTCTQCSYSADKKVSLNRHMRMHTVSPSPSPLNVANALANGEPSSDNQDRYCAECDIRFSSQKTFRAHKMHYCNSRHMAKSSSNPATKTTSSCTSGSSPTSPVDTTSCRTPPSPTAQIPPQQPFLALPTNPIIIVPYSLFRSASVLPGLSSAAGLPNPDTPCFLLPNGTLQPMTSAITTNPQNQQPEVLKTANKPKESSVIRETSSAPLDLSVRKSPEPKDLVIDLGDDQEKENQKRTPTPEKIECVPSLHGSPPSTPVSVSGASPSLSISPKRKHDETSRSSSPKQLRSTPKSTTSAEKARTSPEANSIPQFDIPSSLHPILMRAGTLPLFPPEVQMRLSEIPTLPPVMPQVLVKQGVSKCKDCNIVFCKLENYVIHKKHYCSARTLEEDSSKTSGSPPVSPRSTGTTSPAGQYQQLICLACGIKFTSLDNLNAHQAYYCLKRGEMDIRKCGKCRGIAEPGHQCVPHTALAGWKCPCCDVISPTASAAQRHMDSHTGVKAYRCTICRYKGNTLRGMRTHIRMHFDKRSPDLQEEKYITYILEDDSSNTMEVSVAPSAGAPGVMDDRAASPSSEGHSELLHHCPQCSYSSTYKANVLRHIKLVHEVNVADESVVNGSDEKNTRSMPILEEDEEIVVKKEAIEPEVIIAQGEEPVIKEEALEPSTTPKSKNSDEEILQEASKPGAKYCKSCDIYFNYYSTFIAHKKFYCSSHAGEITAASANNNNNPTTRAAEASVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110994;
- 90% Identity
- iTF_01290856;
- 80% Identity
- -