Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776682.1:8497116-8500334[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00059 0.11 15.1 0.8 2 20 90 108 89 109 0.95

2 10 0.018 3.4 10.4 4.6 2 23 203 225 203 225 0.91

3 10 0.16 30 7.4 0.0 2 20 458 476 457 480 0.84

4 10 0.00023 0.042 16.4 2.0 2 23 542 564 541 564 0.97

5 10 0.034 6.2 9.6 0.1 2 23 588 610 587 610 0.93

6 10 0.013 2.5 10.9 3.6 2 23 659 681 658 681 0.96

7 10 0.14 26 7.6 3.7 2 23 695 717 694 717 0.92

8 10 0.00048 0.09 15.4 0.6 2 23 771 793 771 793 0.95

9 10 0.038 7.1 9.4 0.2 1 23 865 887 865 887 0.98

10 10 0.014 2.6 10.8 0.1 2 23 897 919 896 919 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00059	0.11	15.1	0.8	2	20	90	108	89	109	0.95
2	10	0.018	3.4	10.4	4.6	2	23	203	225	203	225	0.91
3	10	0.16	30	7.4	0.0	2	20	458	476	457	480	0.84
4	10	0.00023	0.042	16.4	2.0	2	23	542	564	541	564	0.97
5	10	0.034	6.2	9.6	0.1	2	23	588	610	587	610	0.93
6	10	0.013	2.5	10.9	3.6	2	23	659	681	658	681	0.96
7	10	0.14	26	7.6	3.7	2	23	695	717	694	717	0.92
8	10	0.00048	0.09	15.4	0.6	2	23	771	793	771	793	0.95
9	10	0.038	7.1	9.4	0.2	1	23	865	887	865	887	0.98
10	10	0.014	2.6	10.8	0.1	2	23	897	919	896	919	0.93

Sequence Information

Coding Sequence: ATGACATCCGTCACGATACCCTCGAGCTCTGGTCCCTTGCATGGAGGATACTCCTCATCCTCATCGGTGACGGAAGAAATATCAAACAGCAAAGTCGATTTTGACGCTGCACGCACAGTGAAACGTTCGCTAAGCATCACATCCAGCGAATCATGTAAGAAGCGCCGAAAACAGTCAACTCCAATTCGAATATCCACCACCGAAGCGGAACCAGCGTCAAATTCACTCGAAGGTAAGCCCGCCGTGCCTTCTCCCGAGCCCAATCTTCGTTGTCCGGTTTGCCAACTTTGTTTTGATCACTCAGAACAACTTCAGAATCACATAATATGCGATCATCCTCCGTTGGAGTGCAAAAAAGAACCTGAAGACCACTCATCAACACCTTCTTCCGTGCCATTCCTGGAACACTCAGAAACATCAATGGGGTTGACCATGGCCAGGCCAGAGATGCAGTGGATGAACGACATCCAAAGTAAAGACTGGATGAGTTCAACCATACCTAGCTTGCCTTTTAATCCAGCCAATCCTATGTTTATGGCATTACCACAATTCACCCAGCCAGAAAACATACCCATGAAACCCATTCGAATATTTAATCCTGACGCGTATTGTGACCTTTGCAACAAGGAGTtttgtaacaaatattttttgaaaacacacAAAGCAAACAAACATGGTATTTACACCGACACGCCTACAACAGAACAGATGCAGCTGCAAAACCCCGTGGTTGTGACTTCTCTTGGTGGTAACCCCAAACTCCCTAATTCCGTGCCAACTATAGAATCATCTACGATGAAAACTGAACCTAAAACCCCAGTGAACGTAATACATCCTTTTAGTAATATGTTTTCTACCTCCTTTTCGAAACAAACTGGAGCCAACGTGTCTGAATGTGAAATTCATGACAGCGCGGCAAATTCAAATGGCTTGTCATCTTCAAGCGATAGTGATAAAATATTTCCAGACGATCAGCCTGCCGAAGAATACCCTAGCCCTAGTAATACACAAACCGAATCTACCTCATTAAAAAATGATCCAGACGGAACGTTCTATGATACATCGAGCAAACTCTCTCCGGATCAGCAAAGTCGTGAACTGGATTTGTCCTACCGTTTAAGAAGATTTGGAGTGATGAATCCCAAAGCATTTTGTGAAATATGTTGCAAGGAATACTGCAACAAATACTTCTTGAGGACTCACAAACTGAAACGTCACGGAATTTATATTCCGGATGACAAAGAGAAGGATGCTAGAACTGAAAGCTTAATTAATTTTCCTTTGTCGAATAATGTACAAACCAGTCCACTTAATCTTATAATGACTGAGCAGTCCAGTTCCGACCGCAAAACTACCTCACCAAGTAACATTAGTTGTGATATTTGTGGCATAAAATTCCAGAACGCCAGTTTAGCTCAGTTACATAATGTTAGTGTTCACGGGAAAATATATTCTAAAGACCACGAACAGTCCGACGGTTCCCCGCAAGATGTAAAGAAACTACCAGAGATGTTCAAAGCGCCCGAAAAATCACTAAATGCCGAAGCGATCAGTGAAGATCTACAGAAATTGCAAACTATGATTTTACAACTAAACGATTTAGATGTCAGTAAAGTATCCACAACGTGCAGTGTCTGCACCAAAGAATTCGAAAATAGATTTTACCTACACGCCCATATGATGACTGAACACGGGATGTTACTGGACGATGGCGAAGCAGAAAAAACTGGAGAATCCGAAAGTAATTCTAACAATAACACGATGTGTGACTTATGCGGCAAAGAGGTACAAAATGCCGATGAAATGACAAAACACGTAATGGAGTCTCACTCGAATAATCAAGTGGGAGGTGAATCGAACAAAGATGACTACAATGGATTCGTTACCTCAGATAAAGTAGTAAACAGAATATCAATTTCCAGTGGACATATCCCAGAGCGAAGAATCTCCATGAATGTTACGCCAACCAGTAGTTATTGTGAAATATGCAATAAAGAATTAtgtaacaagtattttatgaaaACGCACATGCAAAGAATGCACGGCATCGAAATCGAAAACGGAGCACAAATAGGTGGTGTTGTTTGCGATATCTGTAATAAGGAACTTTGTAGCAAGTATTTTCTAAGGGTTCATAAACACAACACTCACGGCATCGTAGAATACGGAACTAATCTCCTTCCGCCACGTAAATCCGACGGCGAGCCGCCTCCGCCACAATCGTCAACTGTTCCGCCAGAGCCTGATACAGCGCTGAAGCCAGGCGACTTGGCAGACTTAAGTCACAGATACTTCACCCACTTCACGGAGGTTTGTACGATCTGCAGTCGACGATTTAGAAGTACAAAGTGGTTAAAAGCCCATTTGGTGACAGATCACGGACAAGCGGGCGCCGAGAAGTGGTCCGAGTTAGAACATCAACTGCAGCAGACTCTTGGCCATACTCCTAAATCTTCCACCACCATTAAAATCGAGGGATCTAGCCCAAATTTAAAGGTCCCAAACGGTGGCCAAGAGACGGCACAACAAAAAGTGGGAATACAAAATGTTATATCCAGTTTACTGGGAATTGATGAAACAAATTCGAAAATGTATCAATGTACCTATTGCCCTTTCACCACCCCTTTACTACCACTGTTATTTGTACACGAGCGGTCGCATTCTCTGAATGCCGAGGGAATGCCGTTAAAATGTCCTGTGTGCCCGCAAAGCTTTTTGGAGCGGGAGTTACTGCAACGCCATCTAGTTTCACAGCATCCGTTTTTATCATTACCTTCTGTATCGAAAGAAGAGAACAGCGTTTGTAAAGAAAACTCGGAAGATGCAGAGACCGATAATGAACAAGGGCAAGAACAAGCGTTACCGACATTCGGTCAAGGGATGGTCAGGCAAAATTTAGCTAAAAGTAGAAAACAATCATCGTCACCGATCAAATTGAAACAAGTGGAATTGTCTTCGGAGATCGGACAATCATTAAAGGACGTGGCGAAAAGGATGCAATGGCCAGCGACATATGCAATACCGCAGGGCCAGAACCAGGCTCAAGACCAGGACCAAGAGGATCCAAGTTTCGCGTCCAAGCCCGGGTACGTCATGCAGGCCTTCCTCTTGGAGGAATCCACTTCCGAACGCCGGGTAATGCCCTCAGTTGTTTTTTTACCGATGCTGCAGAAACAACCTGCTCCTATCACTGTTACCTTCACACTTACCCCGGCCTAA
Protein Sequence: MTSVTIPSSSGPLHGGYSSSSSVTEEISNSKVDFDAARTVKRSLSITSSESCKKRRKQSTPIRISTTEAEPASNSLEGKPAVPSPEPNLRCPVCQLCFDHSEQLQNHIICDHPPLECKKEPEDHSSTPSSVPFLEHSETSMGLTMARPEMQWMNDIQSKDWMSSTIPSLPFNPANPMFMALPQFTQPENIPMKPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYTDTPTTEQMQLQNPVVVTSLGGNPKLPNSVPTIESSTMKTEPKTPVNVIHPFSNMFSTSFSKQTGANVSECEIHDSAANSNGLSSSSDSDKIFPDDQPAEEYPSPSNTQTESTSLKNDPDGTFYDTSSKLSPDQQSRELDLSYRLRRFGVMNPKAFCEICCKEYCNKYFLRTHKLKRHGIYIPDDKEKDARTESLINFPLSNNVQTSPLNLIMTEQSSSDRKTTSPSNISCDICGIKFQNASLAQLHNVSVHGKIYSKDHEQSDGSPQDVKKLPEMFKAPEKSLNAEAISEDLQKLQTMILQLNDLDVSKVSTTCSVCTKEFENRFYLHAHMMTEHGMLLDDGEAEKTGESESNSNNNTMCDLCGKEVQNADEMTKHVMESHSNNQVGGESNKDDYNGFVTSDKVVNRISISSGHIPERRISMNVTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIVEYGTNLLPPRKSDGEPPPPQSSTVPPEPDTALKPGDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLVTDHGQAGAEKWSELEHQLQQTLGHTPKSSTTIKIEGSSPNLKVPNGGQETAQQKVGIQNVISSLLGIDETNSKMYQCTYCPFTTPLLPLLFVHERSHSLNAEGMPLKCPVCPQSFLERELLQRHLVSQHPFLSLPSVSKEENSVCKENSEDAETDNEQGQEQALPTFGQGMVRQNLAKSRKQSSSPIKLKQVELSSEIGQSLKDVAKRMQWPATYAIPQGQNQAQDQDQEDPSFASKPGYVMQAFLLEESTSERRVMPSVVFLPMLQKQPAPITVTFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296846;
90% Identity: iTF_01290790;
80% Identity: -