Lqua000166.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- CAVMBH010000045.1:80678-87092[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.22 14.2 2.1 1 23 116 138 116 138 0.98 2 12 8.1e-05 0.015 17.8 0.8 1 23 146 168 146 168 0.98 3 12 2.1e-05 0.0038 19.7 3.5 1 23 177 199 177 199 0.98 4 12 0.0011 0.2 14.3 0.4 2 23 204 225 203 225 0.97 5 12 0.0063 1.2 11.9 1.9 1 23 234 256 234 256 0.98 6 12 0.028 5.2 9.8 5.4 1 23 265 287 265 288 0.95 7 12 0.041 7.7 9.3 2.3 1 23 295 317 295 317 0.98 8 12 0.0052 0.96 12.1 1.4 1 23 323 345 323 345 0.97 9 12 0.084 16 8.3 5.9 1 23 354 376 354 376 0.99 10 12 0.14 25 7.7 2.3 1 23 385 407 385 407 0.98 11 12 9.4e-05 0.017 17.6 0.2 1 23 416 438 416 438 0.99 12 12 0.0002 0.037 16.6 2.9 1 23 447 469 447 469 0.98
Sequence Information
- Coding Sequence
- ATGCCAACTCATATTAAAAGTGAAGTTGGGGAAGATATTACTGTGCTTCCAGAAATTAATGAAGACTTTTCAGAAATGGAAGGCGGAAGACAAATGAAACCTGAAAATACAATTCAAATTAGAGAGGAATATGAAATAATGGcagaaataaataatacatcTTTAAAAGTAGTGAAAGAAGAAATAAACACCATATATGAAAGatgccAGGAGCCTTCTGAGGATACTACAATGGAGTCAATGGACAACATCAATATATCTCAATATGATATGAATCTTTCTGTGGACTCTAAAACTGACCTTGAGAAACATATAACTCATTCAATCTTTTCGAGAGACGCAGCGCATAAGTGCAACTTATGTCAATTTGAGACAGAACAAAAAACAGATCTTCAGCAGCACATGCTTATCCATAAGGGTCCTTCAGAGATAATCTACAGGTGTGAAATGTGTTCGTACGAGACAAAGCGTAAAAGTTATCTGACAGCTCACGTGTTGAtccataaggatccttcagacaTAGCAATGTATAAGTGTAATATGTGTCCATACGAGTCAAAGCACAAGAAAAACCTTAACCGGCATATGGGAACCCATAAAAATCCGGACAAATGTGAAATCTGTTCATATGAGAccaaacaaaaaaaatctatGGAGGTGCATATGTTGATTCATAAAAATCCTTCTGCTGTAAAAAAGTTCAAATGTGAAGTGTGTTCGTATGAGACGCTACAAAAGAGATATCTCAAGAATCACATGTTAACCCACAAGAGTTCTTCAGAGACTACGATGTATAATTGTGGTATGTGCACGTATGAAACGAAGAAAAAGAGTTATCTTACCCTTCACATACAGCACCACCACAATTCTGAAACCACAGTACATAAGTGTGAAATGTGTTCATTTGAGACAAAACTTAAAGGATCAATGAAGACGCACATGTTGGTCCACACAAATGTACCAATGTATAAGTGTGACATGTGTTCGTATGAAACGAAATATAAAAATGGTCTCAAAAGTCATGTATTGAACCACAAAAACCCCTCAGAGACTGCAATGTACAAGTGTGAAATGTGTATATACGAAACAAAACATAAGAGATACCTTCATAGACACATTCTGACCCATAAAAATCCCTCAGAAATACCTATATATAAGTGCGAAACATGTTCATATGAAACTAGACATATAAAGTCTATGAAGATGCATGTGTTGATAcataaaagtccttcagaagtaacaatgtacaagtgtGATATATGCCCATACGAGGCGAAACGAAAGAGATACCTCATCGAGCACATGCTGGTCCATAAAGGTCCTAAAGATACGACAATGCATAAGTGTGAAATATGTGAGTACGAAACAAAAAACAAGAGATATCTTTCCCGGCATATTTTGACCCATAAAACCCTAAAATAG
- Protein Sequence
- MPTHIKSEVGEDITVLPEINEDFSEMEGGRQMKPENTIQIREEYEIMAEINNTSLKVVKEEINTIYERCQEPSEDTTMESMDNINISQYDMNLSVDSKTDLEKHITHSIFSRDAAHKCNLCQFETEQKTDLQQHMLIHKGPSEIIYRCEMCSYETKRKSYLTAHVLIHKDPSDIAMYKCNMCPYESKHKKNLNRHMGTHKNPDKCEICSYETKQKKSMEVHMLIHKNPSAVKKFKCEVCSYETLQKRYLKNHMLTHKSSSETTMYNCGMCTYETKKKSYLTLHIQHHHNSETTVHKCEMCSFETKLKGSMKTHMLVHTNVPMYKCDMCSYETKYKNGLKSHVLNHKNPSETAMYKCEMCIYETKHKRYLHRHILTHKNPSEIPIYKCETCSYETRHIKSMKMHVLIHKSPSEVTMYKCDICPYEAKRKRYLIEHMLVHKGPKDTTMHKCEICEYETKNKRYLSRHILTHKTLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -