Lqua066109.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:79905729-79910124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.059 11 8.8 3.6 1 23 109 131 109 131 0.96 2 14 0.0033 0.62 12.7 2.1 1 23 140 162 140 162 0.98 3 14 0.0042 0.78 12.4 8.9 1 23 171 193 171 193 0.99 4 14 6.2e-05 0.011 18.2 1.5 1 23 202 224 202 224 0.98 5 14 0.0033 0.61 12.8 1.0 1 23 233 255 233 255 0.99 6 14 0.002 0.37 13.4 0.3 3 23 262 282 260 282 0.96 7 14 0.0041 0.75 12.5 2.3 1 23 291 313 291 313 0.98 8 14 0.043 7.9 9.3 2.3 1 23 322 344 322 344 0.98 9 14 0.0021 0.39 13.4 2.7 1 23 353 375 353 375 0.98 10 14 0.00013 0.024 17.2 1.0 1 23 384 406 384 406 0.99 11 14 4 7.4e+02 3.1 5.7 1 21 412 432 412 434 0.95 12 14 9.5e-05 0.018 17.6 3.1 2 23 474 495 473 495 0.96 13 14 0.00037 0.069 15.7 4.0 1 23 504 526 504 526 0.99 14 14 0.016 3 10.6 1.5 1 23 532 554 532 554 0.96
Sequence Information
- Coding Sequence
- atggaacatAGCCAAGTTGAAGAGGTAGATAACAAGGATCTACTAAATGGTATGTTAGAGTCTACTTCAAAATTGATGTCAGAGTTTAATGGGGACCTATCGCCTTTAAACCTAGCGAATGAGATAAAAATGGAACCAAAAGAAGAAGCTAGTGATGAACctggtataaaaaatatatccctTACTGAACTAGGTTTACCCATCAAGGATGAATTAGTTGAGATAGAAACTGATTGGAACAAAGATAAAAGcattCAAGAGATGTCCATACCACAGTCAGTTATAAACCACGAGCCACCTGATAAATATGGCGACAAAAAGCTATTCTGCTGTGAAATATGCACATACAAGACAACAGAAAGGTATTCCTTAAAGACACATTCATTAATCCACAAAAACAATTGGGaggtgacaatgtacaaatgtgaaaTGTGTAACTACGAGACAAAATTTCAAGTACGGCTTAAAAGGCATTATCTCGTTCATAAGGATGCTTCAGAGATCACGATGTACAAATGTGAGAAATGTAACTTTCAGACGAAACATAAAAGTTGTCTTAAACAGCACATGCTAAGGCATAAAAACACATCTGAAGTAACTGTGCACAAGTGTGAAGTATGTGAATACGTAACAAAACTTAAAAGCAACCTTAGAAGCCACATGTTAGTCCATAAAAGTCCATCCgaggtaacaatgtacaaatgcgaaCAATGTGTATACACAACCCGACGTATAAATGACATAAAACGACACATATTGACTCACAAAAATAAGGAATATGGATGTGGTATGTGTCCATATAAGACAACACAGCCTTATTTAATGAAAAGACATATGCTGCAGCACGAGGAATCATCACAAGTAACAACTTACAAGTGTTATACGTGTTCTTATGAGGCAACACAGAAGAGATATCTCAAAAAACATTTGTTGATACATCGAAGCGCCGCAGAAACGAAGTGGTACATGTGTGATGTATGTACTTTCAGAACAAAGCATAAATATCTTGTCAAGGCACATGGGTTAACTCACAAGGACAATTCAGAAGTAATATTAtataaatgtgaaatatgcacTTTCGAGACGAAACACAAGCGTGGTCTTAAAATGCACATATTATCCCACAAAGTTCGTTCGGAAACAAAGATGTACAAGTGCGATTTATGCCCATATGAGACTAaatctaaaattaatattaagaagCACATGCTAACCCACAAAGAAGTATCAAACTATAAGTGCCAGAAGTGTGAATTTGAGACGGAGCATGTGGCATATTTTAGGAAACACATGTCTTGCCACAAAAGCTCAAAAATTCTGAAGTATAAATGCGATAAGTGTGTTTTCGAGACAGACTGTAAAAGCCTTCTTAGCGCTCACGCTTTATGTCATAGAGATCCTTCTGAAGAAACATGGTGCGAATGCGACTTATGCGATTACAAGACCAATAACAAAAAGAATCTTAAAATACATATGTTGACTCATAAAGATCCTTCGGAGTTAAAGATGTATCAGTGTGAGGCGTGCACATACACGACAAAgtataaaagtaattttaatagGCATCGACAAACTCATGAGGACGAAACCATTCACAAATGCCAAATGTGCGCATATGAAACAAAACGTGAAGCGTATCTTACAAGACATGTGTTGTTGCATTCAAACCAGGATGTCGTGGAACCAAAACGCTAA
- Protein Sequence
- MEHSQVEEVDNKDLLNGMLESTSKLMSEFNGDLSPLNLANEIKMEPKEEASDEPGIKNISLTELGLPIKDELVEIETDWNKDKSIQEMSIPQSVINHEPPDKYGDKKLFCCEICTYKTTERYSLKTHSLIHKNNWEVTMYKCEMCNYETKFQVRLKRHYLVHKDASEITMYKCEKCNFQTKHKSCLKQHMLRHKNTSEVTVHKCEVCEYVTKLKSNLRSHMLVHKSPSEVTMYKCEQCVYTTRRINDIKRHILTHKNKEYGCGMCPYKTTQPYLMKRHMLQHEESSQVTTYKCYTCSYEATQKRYLKKHLLIHRSAAETKWYMCDVCTFRTKHKYLVKAHGLTHKDNSEVILYKCEICTFETKHKRGLKMHILSHKVRSETKMYKCDLCPYETKSKINIKKHMLTHKEVSNYKCQKCEFETEHVAYFRKHMSCHKSSKILKYKCDKCVFETDCKSLLSAHALCHRDPSEETWCECDLCDYKTNNKKNLKIHMLTHKDPSELKMYQCEACTYTTKYKSNFNRHRQTHEDETIHKCQMCAYETKREAYLTRHVLLHSNQDVVEPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -