Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776680.1:80859049-80860485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0014 0.27 13.9 3.8 2 23 22 43 21 43 0.97

2 15 0.0016 0.29 13.8 2.8 1 23 52 74 52 74 0.97

3 15 0.00022 0.04 16.5 2.5 1 23 83 105 83 105 0.98

4 15 0.0073 1.4 11.7 4.1 1 23 114 136 114 136 0.98

5 15 0.0018 0.34 13.6 2.8 1 23 145 167 145 167 0.99

6 15 0.033 6 9.6 4.9 1 23 176 198 176 198 0.98

7 15 0.0014 0.25 14.0 1.9 1 23 207 229 207 229 0.99

8 15 0.034 6.3 9.6 6.9 1 23 238 260 238 260 0.98

9 15 0.00055 0.1 15.2 4.2 1 23 269 291 269 291 0.99

10 15 0.22 41 7.0 8.4 1 23 300 322 300 322 0.97

11 15 0.00022 0.042 16.4 3.0 1 23 331 353 331 353 0.98

12 15 0.0071 1.3 11.7 4.6 1 23 362 384 362 384 0.98

13 15 2.7e-05 0.0051 19.3 3.2 1 23 393 415 393 415 0.99

14 15 0.027 5 9.9 4.1 1 23 424 446 424 446 0.98

15 15 0.00018 0.033 16.7 2.1 1 23 455 477 455 477 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0014	0.27	13.9	3.8	2	23	22	43	21	43	0.97
2	15	0.0016	0.29	13.8	2.8	1	23	52	74	52	74	0.97
3	15	0.00022	0.04	16.5	2.5	1	23	83	105	83	105	0.98
4	15	0.0073	1.4	11.7	4.1	1	23	114	136	114	136	0.98
5	15	0.0018	0.34	13.6	2.8	1	23	145	167	145	167	0.99
6	15	0.033	6	9.6	4.9	1	23	176	198	176	198	0.98
7	15	0.0014	0.25	14.0	1.9	1	23	207	229	207	229	0.99
8	15	0.034	6.3	9.6	6.9	1	23	238	260	238	260	0.98
9	15	0.00055	0.1	15.2	4.2	1	23	269	291	269	291	0.99
10	15	0.22	41	7.0	8.4	1	23	300	322	300	322	0.97
11	15	0.00022	0.042	16.4	3.0	1	23	331	353	331	353	0.98
12	15	0.0071	1.3	11.7	4.6	1	23	362	384	362	384	0.98
13	15	2.7e-05	0.0051	19.3	3.2	1	23	393	415	393	415	0.99
14	15	0.027	5	9.9	4.1	1	23	424	446	424	446	0.98
15	15	0.00018	0.033	16.7	2.1	1	23	455	477	455	477	0.99

Sequence Information

Coding Sequence: ATGAAGCATTGTGTTCATAGACACAAATTGATTCATCAAGACCGCTCAGACATAACATTGATCAAGTGTGATTTGTGTACTTTTGAGACAAAACATAAGAGCAGTCTTAGGACACACATGTTGAAGCATAAAGATCCATCAGAGGTAACAATGTATAAGTGTGACATTTGCACGTATGCGACAAAAGTGAAGCATTGGCTTCGTAGACACAAATTGAATCATCAAGACCCCTCAGACATAATATTGTTCAAGTGTGGATTGTGTACGTTTGAAACAAAACATAACGGGAATCTTAGGAAACACATGTTAATACATAAAGATCCGTTACAAGTAACAATGTATAAGTGTGATATTTGCACATATGAGACAAAAGTGAAATATCATCTTAGTAGCCACAAATTGAAGCATCAAGACCCCTCAGACATTACATGGTTCAAGTGTGAATTGTGTATGTTTAAGTCAAAACGTAAGGGGAGCCTTAGAAAACACATGTTGACGCATAAAGATGCGTCAGAGGTAACAATGTATAAGTGTGATATTTGCACATATGAGACCAAAGAGAATTGTCATCTTAATCAACACAAATTGATTCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGAGTTTTGTACGTTTGAGTCAAAATATAAGGGGAATCTTGGGAAACACATGTTGACGCATAAAAATCCCTCAGAGGTAACAATGTATAAGTGTAATATTTGCACATATGAGACAAAAATGAAGCATTGTCTTCGTAGACACAAATTGATTCATCAAGACCGCTCAGACATAACATCGTTCAAGTGTGCATTGTGTACTTTTGAGACAAAACATAAGAGCAGTCTTAGGACACACATGTTGACGCATAAAGATCCATCAGAGGTAACAATGTATAAGTGTGACATTTGCACGTATGCGACAAAAGTGAAGCATTGTCTTTGTAGACACAAATTGAATCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGGATTGTGTACGTTTGAAACAAAACATAATGGGAATCTTAGGAAACACATGTTAATGCATAAAGATCCGTCACAGGTAACAATGTATAAGTGTAATATTTGCACATATGAGACAAAAGTGAAATATCATCTTAGTAGCCACAAATTGAAGCATCAAGACCCCTCAGACATTACATGGTTCAAGTGTGAATTGTGTACGTTTAAGTCAAAACGTAAGGGGAACCTTAGAAAACACATGTTGACGCATAAAGATGCGTCAGAGGTATCAATGTATAAGTGTGATATTTGCACATATGAGACAAAAGTGAAGCATTATCTTAGTAGCCACAAATTGAAGCATCAAGACCCCTCAGACATTATATGGTTCAAGTGTGAATTGTGTACGTTTAAGTCAAAACGTAAGGGGAATCTTGGGAAACACATGTTGACGCATAAATAG
Protein Sequence: MKHCVHRHKLIHQDRSDITLIKCDLCTFETKHKSSLRTHMLKHKDPSEVTMYKCDICTYATKVKHWLRRHKLNHQDPSDIILFKCGLCTFETKHNGNLRKHMLIHKDPLQVTMYKCDICTYETKVKYHLSSHKLKHQDPSDITWFKCELCMFKSKRKGSLRKHMLTHKDASEVTMYKCDICTYETKENCHLNQHKLIHQDPSDITLFKCEFCTFESKYKGNLGKHMLTHKNPSEVTMYKCNICTYETKMKHCLRRHKLIHQDRSDITSFKCALCTFETKHKSSLRTHMLTHKDPSEVTMYKCDICTYATKVKHCLCRHKLNHQDPSDITLFKCGLCTFETKHNGNLRKHMLMHKDPSQVTMYKCNICTYETKVKYHLSSHKLKHQDPSDITWFKCELCTFKSKRKGNLRKHMLTHKDASEVSMYKCDICTYETKVKHYLSSHKLKHQDPSDIIWFKCELCTFKSKRKGNLGKHMLTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -