Lqua060202.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:34464958-34490938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.22 14.2 3.1 1 23 327 350 327 350 0.96 2 10 0.00076 0.14 14.8 1.9 1 23 356 379 356 379 0.98 3 10 0.24 44 6.9 0.2 2 23 382 404 381 404 0.94 4 10 1.9e-06 0.00035 23.0 1.5 1 23 415 437 415 437 0.97 5 10 0.012 2.2 11.0 0.0 3 23 442 462 441 462 0.98 6 10 2.4e-05 0.0044 19.5 1.0 1 23 466 488 466 488 0.97 7 10 3.5e-05 0.0064 19.0 0.4 1 23 493 515 493 515 0.98 8 10 0.0023 0.42 13.3 1.1 1 23 521 544 521 544 0.95 9 10 4.7e-05 0.0087 18.6 6.9 1 23 550 573 550 573 0.98 10 10 6.7e-06 0.0012 21.2 2.1 1 23 579 601 579 601 0.98
Sequence Information
- Coding Sequence
- ATGCCTTCATGTGCAGTGCGACATTGTAGCAGTGGGACTCCATCAAAATATAGTGAACCTGTTATATTTTTCTCATTTCCTCACAATGAAAAAATCGCTGAGGAATGGGTGAAATTCTGCGGATACCCTGATCTGAATATCTCAAACAgTACAATATGTTCGAAGCATTTTGAAGACTCATGTTTCATAGACGATCAGAGAGATGAAATAACATATTCGTCTAATATacttcgaaaaataataaaacgagATGCCATACCGACTATTGGTGGTGGTCAGACTTTGAAGGACACTATTACAAATGTGGTCTGTGAGTTTGAACCAACAATATCCGAAACGATAGAACCATTGAAAATACCAGAATCCAGTTCACGTTTGACAGTAAATCCAACTGGCACACCTCCGCCTTTTGAAAAGATTTTTGTGAAAAAccctttttttatcaattttaaagacAATAGTGGTGCCTTTTTAAATGAGATAAGGAACCAGCCGCAAAATTGTGATCCAGAAGTTATCAACTCGGACAAGCCATCAATTCTGGAAGAATATATTCGTTCAGGAAATATTACAGAAGATTATCTTAGTAAGAACAATTATACGTATCCTCTTAATGACATCAACCATGATCATGACTACACAAAAACATACGGTCCTGAACTACGTAATGACAAAGGAAACATATTTTTGACTGTAAATTTAACCGAATATAGTAAAGTGATAGATGTGAAGAGGATATGTGGTATTGTTTTGGTGTTAAATGACCAACcaactcaaaattcaaaaaataacgCATCCACAAATGATACCCACGGAAGTGATAATGGATATACCGTCGAAAGTGTAAGTGGATCCGATCCAATTGATGTGGTTAGAAAGGAAGGCAAatctatttcaataaataaaaagaaaaggaaaaaaaaggACGAGGTAACGTTAGGTGAGCACTTTCAAATAAATGAAAAAGGAGAAAAGGAATTTAATTGTCCGAAATGTGAAAAAAGATATTATTCTCCAAGAGGATTACGACACCATTTCCAAAAAGTACATGATGctagttataaatataaatgctcTAAATGCTCAAAAGTATATAAAGCTTATAATGTTCTAACGAATCACATGAAACGGGAACATTTTATTCCGTGCCAattctgtgaaaataaatatgagaCTGCGCCTCAGTACAAAACTCATTTAAAGGAAGACCATAAGGAAGTACCTTACAATTTGTGCAAGCCATACTTTTGTGAAGTATGTGACAAGGAATTTACAAGCAAGAGCGAGTTTCTAAAACATCTGCGACTACATGGTGGTAACCTATGTGGCATCTGCGCTGAAAGGTTTGACACGAGGGAAGAATTAGCGGCCCATGAGGAAACACACCCTAATAAATACGTCTGTGAAATATGCAACAAAGGCTTTAAAGAAAGGCATTCCCTGACCGCTCATAAGGAGGTTCACAATGATCGAATTTTCGTTTGCACTATATGTCAACAAGGATTCAAAGGCAAGGGCACCTTAAGAAATCATGTGATGACTCATCGTAACGAGAAAAGATTTTTGTGTGATAAATGCCCCATAAGGTGTTATAATCCAAGTAGACTTGCCATGCATCAAAGGACTGTGCATGACAAATTAAGACCGTATAAGTGTCACGAATGTGAGAAGAGCTTCTCCACAACTAGTACTCTGCACTTGCACCATAGaATAGTCCACTTGAAATTAAAACCGTTCCAGTGCGAGTTCTGTGGAAGACAGTTTTCAAAGAAAGATAACTTCATAAACCATAGGAATATTCATATTGGGATACCAAGGAAAAAAAGATTAAGAAAGAATCCATCGACAGAATTAATTCGATGTGTTAGAAATTCAGCTGAACGAAAAAGATGGGATCCTGTTAAAAGTAAGAGGTTTtcctaa
- Protein Sequence
- MPSCAVRHCSSGTPSKYSEPVIFFSFPHNEKIAEEWVKFCGYPDLNISNSTICSKHFEDSCFIDDQRDEITYSSNILRKIIKRDAIPTIGGGQTLKDTITNVVCEFEPTISETIEPLKIPESSSRLTVNPTGTPPPFEKIFVKNPFFINFKDNSGAFLNEIRNQPQNCDPEVINSDKPSILEEYIRSGNITEDYLSKNNYTYPLNDINHDHDYTKTYGPELRNDKGNIFLTVNLTEYSKVIDVKRICGIVLVLNDQPTQNSKNNASTNDTHGSDNGYTVESVSGSDPIDVVRKEGKSISINKKKRKKKDEVTLGEHFQINEKGEKEFNCPKCEKRYYSPRGLRHHFQKVHDASYKYKCSKCSKVYKAYNVLTNHMKREHFIPCQFCENKYETAPQYKTHLKEDHKEVPYNLCKPYFCEVCDKEFTSKSEFLKHLRLHGGNLCGICAERFDTREELAAHEETHPNKYVCEICNKGFKERHSLTAHKEVHNDRIFVCTICQQGFKGKGTLRNHVMTHRNEKRFLCDKCPIRCYNPSRLAMHQRTVHDKLRPYKCHECEKSFSTTSTLHLHHRIVHLKLKPFQCEFCGRQFSKKDNFINHRNIHIGIPRKKRLRKNPSTELIRCVRNSAERKRWDPVKSKRFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00886143;
- 90% Identity
- iTF_00886143;
- 80% Identity
- iTF_00886143;