Lqua057958.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776679.1:92109985-92112098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.053 9.8 9.0 0.7 1 23 67 89 67 89 0.95 2 17 0.83 1.5e+02 5.2 2.3 2 23 94 115 94 115 0.96 3 17 9.8e-06 0.0018 20.7 3.3 1 23 128 150 128 150 0.98 4 17 4.8e-05 0.0088 18.5 1.0 1 23 156 178 156 178 0.97 5 17 4.8e-06 0.00089 21.7 1.9 1 23 184 207 184 207 0.97 6 17 0.39 73 6.2 1.8 3 23 215 236 213 236 0.94 7 17 0.00096 0.18 14.4 2.9 2 23 244 265 244 265 0.97 8 17 0.12 21 7.9 0.5 5 23 289 307 285 307 0.91 9 17 0.11 20 8.0 2.0 1 23 324 346 324 346 0.97 10 17 0.066 12 8.7 1.9 2 23 352 373 351 373 0.96 11 17 0.006 1.1 11.9 0.3 1 23 406 429 406 429 0.94 12 17 0.068 13 8.6 1.1 1 10 437 446 437 449 0.95 13 17 0.044 8.2 9.2 5.9 1 23 466 488 466 488 0.95 14 17 0.00017 0.032 16.8 3.4 1 20 512 531 512 533 0.96 15 17 9.8e-05 0.018 17.6 0.4 2 23 553 574 553 574 0.97 16 17 0.0099 1.8 11.3 3.9 1 23 579 601 579 602 0.96 17 17 0.0018 0.34 13.6 0.9 1 23 608 630 608 630 0.96
Sequence Information
- Coding Sequence
- atggaaCAGGAAGCTAATGATATAAAGATTGAAATCAATGATGTGAAGGTTAAAGTTAAACAcgaaataatagacagtgtagaAACTTTGCTCGAAGGAGGCATTGTCAAACAAGAAAAAGACATTCCTGAATATGTAAACGTAAATACATTTTCCAATGTAAAGGTAGAGACTGAGGCTCATGGTGCACAAGAAACTTTTCAGTGTAGCCAGTGCcctaataaatacaaaaaaattgcttATTTAACAATACATAAGGCTTTACATGATCCTCAGAGGTATTGTCCAATCTGTTATGAAACTTATACATGTAAAAAGAAACTCGGACAGCACTTAAATCAACATATAAAGGACCAAATTAAGGAAGACAAGAAATTAGCATTCAGTTGTAATTACTGCGAAAAAAGTTTTAGTTCCAAAAAGAAGTTTACTTTACATGTGAGGGTACACACGAATGAGAGGCCCCATAAGTGTGAAATTTGTGGGGAAGGTTTTAAGCAGACAGGCACTCTAAAGGATCATTATGTCACTCATACTAAAGAAAAACGTTTCGTCTGTGAGatGTGTAATGGTTCTTTCACTACATCTTCCAGCTTGAAGAGGCATAAGAGAAAAATGCATGATAAAGGGAAAACCATAAATTGCAAACACTGCGACGCCAAATTTTTGAACATGGCTGACTTTAGGACTCACAGGAATAATGTTCATCCTGATGTAGGATATAGGAGGACTTGTCCACTATGTTTGGAGACGTTCCGTActagaaataactttaaaaaacataaacaatatCACGATGATTATAACCATCAATTACCAAAGCGCAAAAAAGTATTCTCAGTATTCAAATATTACCTCTGTATATTATGTGGGCAAAAAATTTCGACATTAAGCTTGTACTTAAAACATAGACGCATTCACCTGAATTATACTGAAGAAGATTTAGAAGaagcaaagaaaaataaagtgtTCAAATGTAAGTCTTGTACTGAACAATTTCTGGCTAAATCTACACTATTTAAGCACATGGATTTACATATGGAAAAGACCTTGAAATGTGACTTGTGTCAAAATGTTTACACCTATCATGGCTTAAATACCCATATGAGAGTTTTTCATCAGATGCTGCACTGCCGTGTTTGTCGCAAAGTTATATCTGGACGCGCGAAGCTTTATTACCACTACCAGAAATGCCACCCCACTGTAAAGAAACCGTACCCTTGCAGTATTTGCGGAAAGCAATATATGGCGCGGAACCAGCTGAATTTACACTTCAAGTTAGTCCACGAAGCAAATTCAGTGAAAAATTTCAAGTGCAACGATTGCGGAAAGAGGTTTTTGACTAAACTTATTATGGGCTCGCACATGGCACACGTACACAAcagaaaaattaaacacaagtGTTCATCTTGCGACTTTGTATGTACAACTAAAAAAGAATTGAGGACCCATAATTCAATTCATAAAGAAAGTAGCGTTAAAGCACAGAAATTTTCTGGGGAAAAACCATCTAACAGCGCATCACACAAACGTTTTCAATGTAAACTGTGTAAGAAAAAATTTAGGTCTAGTAAAAGCTATAGAAGACATCTCATATTCAAAATTTGCAGAAGCTTCATAGAGAAAGGAAAACTAAAAGAGGCTGCTAATAATAATAGGTGTGTGGAATGCTCAAGGGAGTTTATTACTGCTGAAATGTTACGGAGACATATGAACCTACATTCCACTTTTGACTTTACCTGCAGATTCTgtgataagaaatataaaatggtTTGGACGATGAAAAGACATATACAGGTACATCACCCTGGTGAGAGAGTTTTCATGTGTGAGTCTTGTGGCGAAGGGTTTGATACACTACGCCAATATAGGAAACATAAAAATGAACATAAAATGGAGTTGGAAGTCGAACAGGAACCTGCAGTGCATATTAACAGCTATGCTGATGAGGGTTTGAATCTGGAGCGTAATAATATATTTGGTGCTAATGAGTTTGATGTAATTAAACAAGAGCCAGAGGATTCTTCGCTGAGAAATTCGAATCAAGAATAG
- Protein Sequence
- MEQEANDIKIEINDVKVKVKHEIIDSVETLLEGGIVKQEKDIPEYVNVNTFSNVKVETEAHGAQETFQCSQCPNKYKKIAYLTIHKALHDPQRYCPICYETYTCKKKLGQHLNQHIKDQIKEDKKLAFSCNYCEKSFSSKKKFTLHVRVHTNERPHKCEICGEGFKQTGTLKDHYVTHTKEKRFVCEMCNGSFTTSSSLKRHKRKMHDKGKTINCKHCDAKFLNMADFRTHRNNVHPDVGYRRTCPLCLETFRTRNNFKKHKQYHDDYNHQLPKRKKVFSVFKYYLCILCGQKISTLSLYLKHRRIHLNYTEEDLEEAKKNKVFKCKSCTEQFLAKSTLFKHMDLHMEKTLKCDLCQNVYTYHGLNTHMRVFHQMLHCRVCRKVISGRAKLYYHYQKCHPTVKKPYPCSICGKQYMARNQLNLHFKLVHEANSVKNFKCNDCGKRFLTKLIMGSHMAHVHNRKIKHKCSSCDFVCTTKKELRTHNSIHKESSVKAQKFSGEKPSNSASHKRFQCKLCKKKFRSSKSYRRHLIFKICRSFIEKGKLKEAANNNRCVECSREFITAEMLRRHMNLHSTFDFTCRFCDKKYKMVWTMKRHIQVHHPGERVFMCESCGEGFDTLRQYRKHKNEHKMELEVEQEPAVHINSYADEGLNLERNNIFGANEFDVIKQEPEDSSLRNSNQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -