Lqua066154.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:80448942-80464779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.068 13 8.6 2.4 6 23 2 19 1 19 0.95 2 15 0.0003 0.056 16.0 1.6 1 21 28 48 28 49 0.96 3 15 0.002 0.36 13.5 2.5 1 23 59 81 59 81 0.98 4 15 0.00031 0.058 16.0 1.1 1 23 90 112 90 112 0.98 5 15 0.0053 0.99 12.1 2.3 1 23 121 143 121 143 0.97 6 15 0.00038 0.071 15.7 1.6 1 23 152 174 152 174 0.99 7 15 4 7.4e+02 3.0 1.8 13 23 195 205 183 205 0.78 8 15 0.0018 0.33 13.6 0.4 1 23 234 256 234 256 0.98 9 15 0.0015 0.28 13.8 4.0 1 23 265 287 265 287 0.98 10 15 0.00046 0.085 15.4 1.2 1 23 296 318 296 318 0.98 11 15 0.00027 0.049 16.2 1.1 1 23 327 349 327 349 0.98 12 15 0.00016 0.03 16.9 1.9 1 23 358 380 358 380 0.98 13 15 0.017 3.1 10.5 0.7 1 23 389 411 389 411 0.98 14 15 0.0017 0.32 13.6 1.4 1 23 420 442 420 442 0.99 15 15 0.0001 0.019 17.5 3.1 1 23 451 473 451 473 0.99
Sequence Information
- Coding Sequence
- ATGTGCCCATTTGAGACAAAACATAAGAGGAGTCTTAGGAGACACATGTTGAAGCATAAAGATccctcagaagtaacaatgtataaGTGTGACTCTTGTACATATCAAACGATACGTAAGAGTAATCTTAAGAAACACATGTTAAAGTATAAAAATCCCTCAGAGGTAACAATGTATAAGTGTGATATTTGCACATATGACACAAAAGTGAAGCATGACCTTAATAGACACAAATTGATTCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGAATTGTGTACGTTTGAGACAAAACGTAAGGATAATCTTGGGAATCACATGTTGATGCATAAAGATCCCCCAGAGGTAACAATATATAAGTGTGATATTTGCACATATGAGACCAAAGTGAAGTATTATCTTAGTAGACACAAATTGAACCATGAGGACCCCTCAGACGTAAGATTGTTCAAGTGTGAATTGTGTATGTACGagacaaaacgtaagggaaatcTTAGAAAGCAcatattgacgcatacaaatcCTTCAAAAGTAACAATGCATAAGTGTGACTCTTGCATGTATCAAACATTACTTAAGAGTGCGCTTAAGAAACACATGTTGATTCATGGTGGTCTGTTAGAGTCAACAATGTATAAGTGTGATATTTCCGCGCATGAGACGCAACTGAAGAATAACCTTAAGAGACACAAATATAAGTGTGATATTTGCACATATGAGACCAAAGCGAATGGTGATCTTAATCGACACAAATTGATTCATCAAGATCGCTCAGACATAACATTGTTCAAGTGTGAATTGTGTACGTTTGAGACAAAACATAAGGGAAGTCTTAGGCAACACATGTTGAAGCATAAAGATCCGTCAGAGATAACATTGTATAAGTGTGATATTTGCACATATGAGACCAAAACGAATCGTGATCTTAATCAACACAAATTGGTTCATCAAGACCCCTCAAACATGACATTGTTCAAGTGTGAATTGTGTACGCTTGAGACAAAATATAAGGGGAGTCTTAGGAAACACATGTTGATtcataaaagtccttcagatatGAAGATATACAAGTGTGACAATTGTACATATAAAACAAACCGCAAGAGTTATCTTATGAGTCACATATTGATACATaaagatccatcagaaataacaatgttCAAGTGTGCATTGTGTACGTATGAGACAATAAAAAAGGGGCCTCTTAGGAGACACACGTTGACGCATAAAAATCCTTCAGAGGTAACAATGTACAAGTGTGATATTTGCACATATGAGACCAAAGCGAATCGTAATCTTAATCAACACAAATTGACCCATCAAGATCCCTTAGACATTACATGGTACAAGTGTGAATTGTGTACGTATGAGACAAAACATAAGGGGAGTCTTAGGAGGCACATATTGACGCATAAAAATCCCTCAAAGGATTTGGATCTGTCTAAGGATTCTGTGGCATGTATTGAATGTAGGAATAACCTTCAAATATTCTTTCACTTAAGATCAGCCTGTATTGATATGAGCGAGAGAGCAGTATCCTTAATCGATTTGAAAAACGATGTTGATTTAGATCCAATAAAGATTGAAAATACAGATAATCTAAAACCAGCTACAGAGaatcCAAGCAATATTGGAGAATTATTAACTTGCGAAACCTGCCTTGATGgattgcaaaatatttcaaattttttaataaaatatttggatGTGGaagagataataaataaatatactgaaatgGAAGGAAGGGATGATAAAGGGCAGATAAAATTGCAGGATGTTCAACAATTTATGTTCAAGCCAATGTTAAAATTTGAAGCTGATTCCTGCCAAGTAaatgaattaaaacaaaaatatgattGCATTCATGAAGAATTGATCATAAAAGATGAAATCACGTATGAAACAGAAGTGGATAGCCTAGGACCATCGGTTAAAACAGAACATATTGACATTGAATCAGAACAAAGCAATTGTGACAGGTAA
- Protein Sequence
- MCPFETKHKRSLRRHMLKHKDPSEVTMYKCDSCTYQTIRKSNLKKHMLKYKNPSEVTMYKCDICTYDTKVKHDLNRHKLIHQDPSDITLFKCELCTFETKRKDNLGNHMLMHKDPPEVTIYKCDICTYETKVKYYLSRHKLNHEDPSDVRLFKCELCMYETKRKGNLRKHILTHTNPSKVTMHKCDSCMYQTLLKSALKKHMLIHGGLLESTMYKCDISAHETQLKNNLKRHKYKCDICTYETKANGDLNRHKLIHQDRSDITLFKCELCTFETKHKGSLRQHMLKHKDPSEITLYKCDICTYETKTNRDLNQHKLVHQDPSNMTLFKCELCTLETKYKGSLRKHMLIHKSPSDMKIYKCDNCTYKTNRKSYLMSHILIHKDPSEITMFKCALCTYETIKKGPLRRHTLTHKNPSEVTMYKCDICTYETKANRNLNQHKLTHQDPLDITWYKCELCTYETKHKGSLRRHILTHKNPSKDLDLSKDSVACIECRNNLQIFFHLRSACIDMSERAVSLIDLKNDVDLDPIKIENTDNLKPATENPSNIGELLTCETCLDGLQNISNFLIKYLDVEEIINKYTEMEGRDDKGQIKLQDVQQFMFKPMLKFEADSCQVNELKQKYDCIHEELIIKDEITYETEVDSLGPSVKTEHIDIESEQSNCDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -