Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776680.1:80905640-80916196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.016 3 10.6 2.2 1 23 135 157 135 157 0.98

2 15 3.9e-05 0.0073 18.8 2.3 1 23 165 187 165 187 0.99

3 15 0.0017 0.31 13.7 1.6 1 23 191 213 191 213 0.99

4 15 0.00076 0.14 14.8 1.4 1 23 222 244 222 244 0.98

5 15 2.5e-05 0.0046 19.4 0.8 1 23 253 275 253 275 0.99

6 15 0.03 5.5 9.8 1.8 1 23 284 306 284 306 0.98

7 15 0.00014 0.025 17.1 1.1 1 23 314 336 314 336 0.98

8 15 0.015 2.8 10.7 1.1 1 23 345 367 345 367 0.99

9 15 0.011 2 11.1 0.5 1 23 371 393 371 393 0.98

10 15 9e-05 0.017 17.7 0.4 1 23 402 424 402 424 0.98

11 15 0.00058 0.11 15.1 1.4 1 23 429 451 429 451 0.99

12 15 0.47 88 6.0 0.4 1 23 460 482 460 482 0.93

13 15 0.014 2.6 10.8 3.6 1 23 491 513 491 513 0.97

14 15 0.004 0.73 12.5 2.0 1 23 519 541 519 541 0.98

15 15 0.047 8.7 9.1 2.6 1 23 550 572 550 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.016	3	10.6	2.2	1	23	135	157	135	157	0.98
2	15	3.9e-05	0.0073	18.8	2.3	1	23	165	187	165	187	0.99
3	15	0.0017	0.31	13.7	1.6	1	23	191	213	191	213	0.99
4	15	0.00076	0.14	14.8	1.4	1	23	222	244	222	244	0.98
5	15	2.5e-05	0.0046	19.4	0.8	1	23	253	275	253	275	0.99
6	15	0.03	5.5	9.8	1.8	1	23	284	306	284	306	0.98
7	15	0.00014	0.025	17.1	1.1	1	23	314	336	314	336	0.98
8	15	0.015	2.8	10.7	1.1	1	23	345	367	345	367	0.99
9	15	0.011	2	11.1	0.5	1	23	371	393	371	393	0.98
10	15	9e-05	0.017	17.7	0.4	1	23	402	424	402	424	0.98
11	15	0.00058	0.11	15.1	1.4	1	23	429	451	429	451	0.99
12	15	0.47	88	6.0	0.4	1	23	460	482	460	482	0.93
13	15	0.014	2.6	10.8	3.6	1	23	491	513	491	513	0.97
14	15	0.004	0.73	12.5	2.0	1	23	519	541	519	541	0.98
15	15	0.047	8.7	9.1	2.6	1	23	550	572	550	572	0.98

Sequence Information

Coding Sequence: ATGGAAATGGACAATGACAACTTTGTTGGACTCGAAAATAAGTTGGACATAATAAATGGACCAACTCGTATTAAGACTGAAATTGATGAAGATGCCATGATCCCAGAAGTAAatcgaagtttttcaaaaataaacaatgaaaaaatccaCTCTACATATATACCAGATGTTAGTTTACAGAACGCAGAGCTCAGcatcaaaaaagaagaaaataatattaaaattgcagaGGCAGATGATATGATGATGGCAGAATTGAATAATGTCTCTTTAAAAATAGAAATGGAAGAAATAAACACTTTATATGAAAGTTGTCAGAGGCCTTCTGTAGAAATTGCAATAGACTGTAAAACTGACCCTGAAGAAATTGGGACTCGACCAGCCCCCTCAGGAGTAACAGCGTATAAGTGTGGAATATGTAAATTTGAAACGAAACGAGAAACAAAATTTCAGCAGCATGAGTTAACCCACAAAAATCCCCCAGAGTTAACGTATAAGTGTGAACTTTGTACATATGAGTCAAATCAGAAGAGAAATCTTACCCGGCATATGAACTCGCATAAAAATCCATACAAATGCGAAACATGTTCGTATGAGACGAAGCAAAAAAAATACATTGAAGTACACATGTTAACTCACGAAAATCCCTCTGCCATTGAGAAGTTCAAATGCGAAATGTGTTCATATGAGGCCGTACAAAAAAGACACCTGAAGGATCACATGTTGGTCCATAAAAGTCGTTCAGAAATCACTATGTATAAGTGTGACATATGCCCTTATGAAACGAAACAAAAAAGGTATCTTAAGGATCACATGTTGATCCACAAAAGCCCTTCTGAGATGACGATGTATAAGTGCGACATATGCATGTACGAGACGAAAAAAAGGAGGTATCTTAACTTGCACATGCTGAACCATGACAATACTGGGAGCGCGTTGTTCAAGTGTGAAATATGTTCGTTTGAAACCAAACAAAAAAGTTATCTTAATAGCCACATGGTGGTCCATAAAAGTTCCTCGGAGGTTACAATGTATAAGTGTGCAGAATGTACGTATGAGACCAAACTAAAGCGGGTTCTTAAGCGTCACGTACTGACCCATAATAATCCTTACATATGTGAAATATGTTCGTATGAGTCAAAACAAAAAACAACATTTGATTTGCATATGTTGATCCACAATAATCCTTCAGCAATAAAGACATTCAAGTGCCAGATTTGTCCATATGTGGCAATACAAAAAAAGAATCTTTATAATCACATGTCCGTTCATAAAATGCCTATGTACAAATGCGACATATGTACATATGAGGCGAAGAAAAAGAGATATCTCAACCTTCATATGCTGACTCATAAGGATCCTTCTGAAGTAACGATGTACAAGTGTGAGCAGTGTCCATTTCAGACGAAACTTAAAGATTATATTCGGATTCACGCATTAGCACATAAAGATCCTTCAGAGCTACAAATGCATAAATGTGATAAGTGTCCGTatgagacaaaatataaaaatagtctTCGAGTTCACAAGTTGAACCATACAGAGGTAAAATCCTATAAGTGCGACTTATGTGCGCATGAAACAAAACGCAGAAGGGACCTTGAAAAGCACCTTGTGACCCATAAAGATCCTTCGGAGGTGCCCATGTACAAATGTGAAATGTGTTCATTTGAGACGAAATACAAAAAGTCTATTACGAAGCATGTGTTAAGACATAAGAATCATCAAAAATAA
Protein Sequence: MEMDNDNFVGLENKLDIINGPTRIKTEIDEDAMIPEVNRSFSKINNEKIHSTYIPDVSLQNAELSIKKEENNIKIAEADDMMMAELNNVSLKIEMEEINTLYESCQRPSVEIAIDCKTDPEEIGTRPAPSGVTAYKCGICKFETKRETKFQQHELTHKNPPELTYKCELCTYESNQKRNLTRHMNSHKNPYKCETCSYETKQKKYIEVHMLTHENPSAIEKFKCEMCSYEAVQKRHLKDHMLVHKSRSEITMYKCDICPYETKQKRYLKDHMLIHKSPSEMTMYKCDICMYETKKRRYLNLHMLNHDNTGSALFKCEICSFETKQKSYLNSHMVVHKSSSEVTMYKCAECTYETKLKRVLKRHVLTHNNPYICEICSYESKQKTTFDLHMLIHNNPSAIKTFKCQICPYVAIQKKNLYNHMSVHKMPMYKCDICTYEAKKKRYLNLHMLTHKDPSEVTMYKCEQCPFQTKLKDYIRIHALAHKDPSELQMHKCDKCPYETKYKNSLRVHKLNHTEVKSYKCDLCAHETKRRRDLEKHLVTHKDPSEVPMYKCEMCSFETKYKKSITKHVLRHKNHQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -