Lqua038308.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- CTSB
- Assembly
- GCA_963675555.1
- Location
- OY776676.1:154910159-154959187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.018 3.4 10.4 0.2 1 23 1464 1487 1464 1487 0.97 2 11 0.0016 0.3 13.7 2.1 1 23 1493 1515 1493 1515 0.93 3 11 0.00018 0.033 16.8 2.4 1 23 1521 1543 1521 1543 0.98 4 11 0.081 15 8.4 0.5 2 23 1550 1572 1549 1572 0.93 5 11 0.022 4 10.2 3.5 1 20 1583 1602 1583 1604 0.85 6 11 0.00021 0.039 16.5 1.0 1 23 1611 1633 1611 1633 0.98 7 11 5.3e-07 9.8e-05 24.7 0.4 1 23 1640 1662 1640 1662 0.98 8 11 3.4e-07 6.2e-05 25.3 0.6 1 23 1668 1690 1668 1690 0.98 9 11 3.8e-07 7e-05 25.2 1.2 1 23 1696 1718 1696 1718 0.96 10 11 0.00037 0.069 15.7 0.3 1 23 1724 1746 1724 1746 0.99 11 11 0.14 26 7.6 1.1 2 23 1752 1774 1751 1774 0.97
Sequence Information
- Coding Sequence
- ATGAGACTATTCTGCCTTGCTCTGGTTTTGCTGCACGTAGCGTTAACATTCTCCAAAAAGTTTCCACCTTTGTCTGATGAATATGTCGAACACATAAATAATCAAAATCTTCCATGGAAGGCAAAGAAACATTTTACTGAAGGCACATCCATTCGTCATCTGCTGGGAGCTTTGCCTGATAAATTTAGAAGCTCTTTAGCTGTGGTTACCTATGACGATGACACGACTGAAATTCCTGAATCCTTTGACGCCCGTCAGAAATGGCCAAATTGCAAGTCTCTCAATGATATTAGGGATCAATCGAACTGCGGATCTTGTTGGGCCTTTGCAGCTGTAGAAGCAATGACTGATAGAATTTGTATTCACTCTGATGGAAAAACTAATACGTCCGTATCTGCAGAAGACTTATTAAGTTGCTGCGGCGTCGGCACTATATGCGGAGATGGTTGTAATGGAGGATATCCTGCCGCAGCGTGGGAGTACTGGTTTGAAACTGGAATTGTTTCCGGTGGACTATATAACGCGGCTGGTGGATGTCGTTCATACTCTCTTCCTCCATGTGAACATCACGTAGCAGGGGACCTCGTCAACTGTAACACAGTGGAGGAGTTGGGTACTCCACAATGCACCAAAGAATGCGATGCAGGCAAAAAATTGAACTACAGTTCGGAGATCACTTTCGGACAAAAACCTTACGCAATTTCGAGTGTTCCGAGAGATATCCAGTTGGAAATTATGACCAATGGACCAGTGGAGGCTTCTTTCGACGTTTTTGATGACTTTCCAATATATGCTCAAGGTGTGTACGAAAGATCGGAAGCTGCCGAATTTGAAGGAGGTCATGCAGTCAAAATCATAGGTTGGGGTGTTGAAAAAATCAACGACGCCGATGTACCCTACTGGTTGATTGCTAATTCCTGGAATGCTGACTGGGGAGACAAAGGATATTTCAAAATGATTAGAGGAAAGAATGACTGTGGCATCGAAAGTGTGTACGAAAGATCGGAAGCTGCCGAATTTGAAGGAGGTCATGCAGTCAAAATCATAGGTTGGGGTGTTGAAAAAATCAACGACGCCGATGTACCCTACTGGTTGATTGCTAATTCCTGGAATGCTGACTGGGGAGACAAAGGATATTTCAAAATGATTAGAGGAAAGAATGACTGTGGCATCGAAAatGATTCTGTGACAGCACTAATGCATCCCATAAGATCTCCGTACCAGGTTATGTGGGATAGTCAAGTTGGCCATGAAAAGTACCGCACAACTCATGATGACTATAACGCGCCTAAGGATATCGAAAAAGGCGAAATGCCGTTTCAACCTGAGAAATGTTTAAATGCTGCAGGGAAGTTCAACTTAAAAGGCGTTTGGGTACGATGCATGTGCGATTGGCACAAGAAAGAAGCTTCCGACCTCTCTTCCAAAATAGAGGCAGATTATGTGGGCAGATATAAGTCACAAATAGGAAAGTCACTAAATCCAAATAGCAACATTGATTCTGTACCAAAGGGATTTGCTTTTGGACTTCATTCCCAGCTTGAATCATGCGGCATGGAAGAATTAATGAAAGATTCTGACTGCCCCCCCTGCGTGTTTAGAAGGGATTTTTACAAGTGGATGGCTTCACTCAATAAATGTAGGAACGCTTTGAATGAGAGAGATTTTGATTTCAAGAAGTTTCATGCAACCTTGTTAGATCACGATGTTgaaAATACTGGTTTTTTACCAGTTGAGGAAGTTTACAACATTTGTGCCCAAGAACATATTACATTCCACAAGGACGAAATTGAAGCATTGTTAAAAGTATTAAAGATTATCGTTGATGACAAAATTGATTATGGAAGATTTGTTGAAATGATAGATGTTAACAAGCCAGCCATAGACGTTGTACCATTTCATGATCTTCCGAAACATAATCAGTATTATGAGACAAGTAACCAAGCGGCTGATTATTTAATCACGAACAATGCAGGCACTACCAATGATGAAGATAGGTACTGCGTATTATTATTTGATGAAATGGACATTAAAGAAAATCTTCAATATGATCGTGCTACAGATCGTATTATTGGTTATCAAGACTTGGGTGTCGGAAGGTCAACCAATGAGTTTGCAAACCGAGCTCTAGTATTTGTTGCACAGGGTCTGTCAAAACGGTGGAAACAGCCTCTTGCATATTACTTTTCTAAAAATGGCGTTGATGCCGGAGATTTAGCAGCAATTATAAAGGATGTATTGCAAGCTCTTAAAGATGAGGCCAAATTGCATGTTGTTGGCATTGTTTGTGATATGGGAACTTCCAATGTTAAGGCCCTTAAATCTCTGGGAACTTCTGTGGCACACCCATACATTGAACATGATGGGGATAAAATACATATTGTGTTTGATCCTCCCAATCTACTTAAATGTACAGTTGCACTTTTTAGAAAACATAGCGTGCTTCTTCCTGTACAGATTGGGGATGAGATTTTGACAATGGAGGCGAAATTTTCAGATATTGTAGAGGCTTACAAAATAGATGAAAGAGCCCCACTTATTTTTAGAAGTTTGCATAAATTAACACCGACACATTTGGCACCTATAATGAGATTTGCAATGAAAGTAAAGATTGCAGCACAAGTAATGAGTCGCACAGTTGCTGCCTTTTTGTTCACACTGCTCAGTCAAAATTTATTACCCCAACGATCGCTAGCTACCGCTACTTTTGTGCATCAAGTAGATGAACTTTTTGAAAGTTTCAATGGAACTGGTAAAACTGCACCAGATGGCAAAGAACTTCGATGTTGTGTTTCAAACAATTCCCCCCATATGACATATTGGAAAAAGTCCTATAAAATGGTTCAAAGATGGAAGTTTAGGCGAATTACAAAAACAGGAAAACTGATGAAGAAGAAGCCTCCATCACAAGTTGGTTGGATGGTTTCCATTAAATCAATACAGGCCATATGGAAGTTATTAAAATCAAAGGGTTTTCAATATCTGCGCCAACGTTCCATAAACCAGGATCCTGTAGAAAATTTATTTGGGGCTGTGCGATCTGGCTGCGGCAGCAATGACAATCCCACCTGTATCCAATTTACAAACAGCTTAAAAACGCAAATTTTAAACGGTCTAACAAAACAAGACCACAGTGGTAGCAACTGTGAAGAAGATGATTCAATACTTTTAAGTGACCTACGATCTTTTATAAATATGGAAATGATTGAAGAACCAGGGGCAGTAGGAATTTTGAATCAGACGAATGAGTTACCTCAATGTGTAACTGGCACTACCTCGAAACAAGATGTTCGTGGCATAGCTGAAGCAGTGGCTATTGGGAGTGTAGAAACCCTTTCTATAGCCTATGTCAGTGGCTACATCGCTGGAAGGTTACTGAAGGAAGTCAACTGCACATCTTGCCAAGAATATTTAACATCTAACCCAGAACTTCCTCATAAtcaatttataacttttaaagaaTATTCAGAAACGAAAAAAAACCTCTCATATCCTTCAGAGCATTTGACAGTAATAGTAGGACATGGCATTACCCAATTAGAATATGTTTTAGAAAGTATGGCTGCTTCTGTTCAAATTGAAAAAAAGTTATCTGAACATCTGCATACTTGTCTCGATTTTACATGGATTACCTGCCCGAGTCATTCCCAATTAGTGAAAGATAAAATTGTAACAGGAATTTGTCGCATAGATTATGCAGATGTTGATGATGGCTCCAAGTGTAAAGTTGAGGTAGCAGTAACAGAGAGTGTAGTTCACAAAATAAAAAAGGAAGTGGCAGAATTCATACAACATGATATAGATTGGAAAGTAAGCCAAACTGCTTCGAAAGGGCGTAGTGACTGTGATAACAATGAAAACAAAGGTAATGACAGTAGCGAAGATGAGAAAGCGAATGAGAATTTGGAAAATGAAAACCCCGACGTTCCCCCCACATTCTCATTTGTGGGGGTAAAGGTGGAGGTGAAGGAGGATGAATATGTTCTTCCAGATAATGAAGTTGAGGATCAGTATCAGATGGATGGAGGCCCTAAAGCCACATTTTCAGATCACTCAGATGTTGATAGTTATTTTGAATCTAATGTGGAGGTAATGGATAATATAGTCGAGGAGAAAATAGATGCAGCGGCGGAATTCACAAAtgatgaagaaaataatataagagAAGCTAGCTTGATAAGCGATGAGGGCAATGAGAGTAAAGATAATGATAGTATTGAAGAGGATATTCTTAGTGATAATATTGAAGAAACCATTGAAGATTCTGGTGACAGCACAGACTCAGAATATTTACCAGAAGAAATTGAACAACCAAAAATAAAACGTGCCCGAGGCAGACCTCGTAAGACTCCAAAGAAAGCGAAAGAAAAAGATCAGGATCAAGGGGAATTCCCTTGCCCTGCTTGCCAAGAGATATGTACCACAATGACCCAACTTGCAAGACATGCCAGGATAGAACACGAAGGTCTTAAGTTGCACAAATGCTCAAAATGCAACAAGGCATTCGACAGTGCTAATCAGTTGAGGCTACATTCCGTTTCTCACTTACCATCGAAGTCCTTCCAATGTAGTATTTGTTCAAAGGGCTATACTAGCAGGTATCAGTTCAATGAGCATCAGAAACTACACGAGGAGCCAAATGTGTGTGAGTGTGATATCTGCGGATTACCATACACCAAGGCTATCTTTTTGGCCAACCACAAGTTGTCTAAACATGGTATTTCGAAGGTTATCCGTGATAAGAAATATAAGTGCCCCCACTGTCATAAGGGTTTCACAACAGAAAAATACAAAGATCATCATGTGAATATTGGCCAATGTCAAAAAGAATATCCATGCAAAGTGTGCAAAGAGACATTCCTTTCCAAGTCGGATCTTTTTGAGCACATGAAAAGCCACACTGAACATTTCAAGAAATTCGTATGTCCCGAGTGTGACCAAAGATTTATTCGAAAAGACTATTTGACTATCCATATACGTAGACACCGAGGAGAGAAACCTTTCAAGTGTAAATATTGCGGAAAAGgttttcCAAGACCTTCAGATTTGACTGTTCACGAGAGATACCATACGGGAGAAAAGACTCATTTCTGTTCGATTTGTGGAAAAGGATTTGGAAGagCGTACAATTTACAAGTACATATGAGAACTCATACTGGAGAAAGACCGTATCAGTGCACATATTGTGATAGTGCCTTTGCCCAAGGTAATGACTTGAAGGAACATGTGAGAAGACACACTGGTGAAACAGTCCGATGTGAATTATGTTCAAAGAACTTTTTATCCCTACGTTTCCTGGCACGGCATAAACGGACAGTGCATGGTGTTGATTCACCACTGTCTACATCAATGGAAGTTCCTTGTGTTGATGGTCCAGCTTCAGTCCTATTAACTTTCTCACCTAGTTCGGAGTTCTTTTTATTTGCCGAAGACACATTTATTGTATGA
- Protein Sequence
- MRLFCLALVLLHVALTFSKKFPPLSDEYVEHINNQNLPWKAKKHFTEGTSIRHLLGALPDKFRSSLAVVTYDDDTTEIPESFDARQKWPNCKSLNDIRDQSNCGSCWAFAAVEAMTDRICIHSDGKTNTSVSAEDLLSCCGVGTICGDGCNGGYPAAAWEYWFETGIVSGGLYNAAGGCRSYSLPPCEHHVAGDLVNCNTVEELGTPQCTKECDAGKKLNYSSEITFGQKPYAISSVPRDIQLEIMTNGPVEASFDVFDDFPIYAQGVYERSEAAEFEGGHAVKIIGWGVEKINDADVPYWLIANSWNADWGDKGYFKMIRGKNDCGIESVYERSEAAEFEGGHAVKIIGWGVEKINDADVPYWLIANSWNADWGDKGYFKMIRGKNDCGIENDSVTALMHPIRSPYQVMWDSQVGHEKYRTTHDDYNAPKDIEKGEMPFQPEKCLNAAGKFNLKGVWVRCMCDWHKKEASDLSSKIEADYVGRYKSQIGKSLNPNSNIDSVPKGFAFGLHSQLESCGMEELMKDSDCPPCVFRRDFYKWMASLNKCRNALNERDFDFKKFHATLLDHDVENTGFLPVEEVYNICAQEHITFHKDEIEALLKVLKIIVDDKIDYGRFVEMIDVNKPAIDVVPFHDLPKHNQYYETSNQAADYLITNNAGTTNDEDRYCVLLFDEMDIKENLQYDRATDRIIGYQDLGVGRSTNEFANRALVFVAQGLSKRWKQPLAYYFSKNGVDAGDLAAIIKDVLQALKDEAKLHVVGIVCDMGTSNVKALKSLGTSVAHPYIEHDGDKIHIVFDPPNLLKCTVALFRKHSVLLPVQIGDEILTMEAKFSDIVEAYKIDERAPLIFRSLHKLTPTHLAPIMRFAMKVKIAAQVMSRTVAAFLFTLLSQNLLPQRSLATATFVHQVDELFESFNGTGKTAPDGKELRCCVSNNSPHMTYWKKSYKMVQRWKFRRITKTGKLMKKKPPSQVGWMVSIKSIQAIWKLLKSKGFQYLRQRSINQDPVENLFGAVRSGCGSNDNPTCIQFTNSLKTQILNGLTKQDHSGSNCEEDDSILLSDLRSFINMEMIEEPGAVGILNQTNELPQCVTGTTSKQDVRGIAEAVAIGSVETLSIAYVSGYIAGRLLKEVNCTSCQEYLTSNPELPHNQFITFKEYSETKKNLSYPSEHLTVIVGHGITQLEYVLESMAASVQIEKKLSEHLHTCLDFTWITCPSHSQLVKDKIVTGICRIDYADVDDGSKCKVEVAVTESVVHKIKKEVAEFIQHDIDWKVSQTASKGRSDCDNNENKGNDSSEDEKANENLENENPDVPPTFSFVGVKVEVKEDEYVLPDNEVEDQYQMDGGPKATFSDHSDVDSYFESNVEVMDNIVEEKIDAAAEFTNDEENNIREASLISDEGNESKDNDSIEEDILSDNIEETIEDSGDSTDSEYLPEEIEQPKIKRARGRPRKTPKKAKEKDQDQGEFPCPACQEICTTMTQLARHARIEHEGLKLHKCSKCNKAFDSANQLRLHSVSHLPSKSFQCSICSKGYTSRYQFNEHQKLHEEPNVCECDICGLPYTKAIFLANHKLSKHGISKVIRDKKYKCPHCHKGFTTEKYKDHHVNIGQCQKEYPCKVCKETFLSKSDLFEHMKSHTEHFKKFVCPECDQRFIRKDYLTIHIRRHRGEKPFKCKYCGKGFPRPSDLTVHERYHTGEKTHFCSICGKGFGRAYNLQVHMRTHTGERPYQCTYCDSAFAQGNDLKEHVRRHTGETVRCELCSKNFLSLRFLARHKRTVHGVDSPLSTSMEVPCVDGPASVLLTFSPSSEFFLFAEDTFIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -