Lqua059250.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:14110924-14112906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0002 0.036 16.6 0.3 2 23 108 130 107 130 0.93 2 14 0.0036 0.68 12.6 2.3 1 23 166 189 166 189 0.96 3 14 0.00091 0.17 14.5 0.8 3 23 195 216 194 216 0.96 4 14 0.41 77 6.2 1.0 1 21 224 244 224 245 0.93 5 14 0.0035 0.64 12.7 0.6 1 21 250 270 250 271 0.94 6 14 1.9 3.4e+02 4.1 1.4 1 19 366 384 366 389 0.84 7 14 5.9e-05 0.011 18.3 0.8 1 23 399 421 399 421 0.98 8 14 1.2e-05 0.0022 20.5 0.8 1 23 427 449 427 449 0.96 9 14 3.5e-06 0.00065 22.1 1.2 1 23 455 478 455 478 0.94 10 14 0.0006 0.11 15.1 1.1 3 23 488 508 486 508 0.98 11 14 1e-06 0.00019 23.8 1.6 1 23 514 536 514 536 0.97 12 14 0.0087 1.6 11.4 3.6 1 23 542 565 542 565 0.96 13 14 0.0092 1.7 11.4 4.0 1 23 577 599 577 599 0.98 14 14 3.8e-06 0.00071 22.0 4.7 1 23 605 628 605 628 0.97
Sequence Information
- Coding Sequence
- ATGGACATTGAACAATGTAGTATTTGTTTAGAAAAATATAGTTCTACTGTAAGCGTAGAAGATTCAGATGAATATAATGTGAGGTGGTTTACGAAATTACAGTTCATAGTCCCCGAATtgGAATGGCTCGAGGAATATCTAATCTGTGAATCGTGCAAAAAGCAGTTGGAACAAGCCTGGGAATTTAAAAAGCTTGTTCTAAATTTAGAAGTAGAAAGAAGGTTAGGGTTAACCAAGAAAGAAACAGATCCTACAGAAGAAAATTCCGATTGCAAAGATAATTGTGATGGTGAATATTACTATGAAGAAATTAAGGAGGTTGTATGTGAGATATGTTCCAAAGTATTTACAACTCAAACCCAGGTGCAGCAACATAAACTGCAAATTCATAGTGATGATAATTTATCTGGAGAAGCCCCACGAAACAAGGATGGCTTACAAAcgaatattaaaaatgaaaatatcttaGCATCAACTGAAAATATTAGTATCGTTTTCTCGTGTTATCATTGTGGTAAAGATTTTGGAACAAAAGAGGACCTACTGTTTCATATTCAGAAACAGCATGGTGAgtttaaattatgtttaatttgtgATAAACCGTGTTCTAATCAGGCAGTGTTGCAAAGTCATATGAAAAATGAACACAAGATAGAAATAGCCAAAGAGTTTGCTTGTTGTATATGTCTACAAAAGTTCGAATCTGAAACTAAATTAAATGAACATACTCAACTGTGCTCTTATAAATTTCATTGCGGCAAATGCCAACAAGGTTACAGTACGAAAAGACTACTAAATGCTCACTTAATATCTTGTAAAAATCAAAACACAACTAATAATACACATGAATGTACTTGCAAAAACTTTTACGCAACGGAAAGGAATCTAAATTTACACAAAAAATGGTGTGCAAAGGAGAAGGAACAGGAAATTAGCCACAAAGGAATTCCCAGTTATAGTTGTAACATATGCGTTGTTGAATTTAATTGTGTTGAAGAATATAATTCACATAACATTTCAAAACATGACTCGGGGAATACCAATGAATCATCTCCAAAGGCCAAGACAAGGAGGGGTCGGAAACCTTTAAGACCATTTACTTGTGAAAACTGCAACGAGCAGTTCGATTATGTAAAATTAGTTGTTAAACATTGCGCATCTGTGCACGGTATGAAAGAAAAAGATGTTAAAGCATATTCTTGCGATAAATGTGACATGCGTTTTGCGTCTAGTGCTAATTTAGATCAACATCGCAACTACCACGAGAGAAATCGTACACACATTTGCAGCCTATGTGGCAAGGGTTTTATAACGAAAAGTGACCTGACAGTTCATGAGTATACACATTACAATCGTAGAAACTATAAGTGTAGTCAGTGCGACAAGGCATTTAACACTAATAAAAACCTACGAACTCACAACTTGGTGGTGCACACTGATCGTAGCTTGTGGAAATATGGCTGCACCATCTGCGAAAAACGGTTCCCTTTAAAGACCAATTTTGACCAGCACCTACGCAGGCACACGGGAGAGAAAAAATACGTCTGTCATATTTGTAGGAAACCATTCATCAGCAAAAGTGAATTGAAGAGACACGTAAACCTACACTCGAATATTAAAGCATTTAAGTGCAACCAGTGCGATAAAGAATACAAAGAGCGAAGGACTTACCATGTACACTTGGCCAAGATGCACGGTATCGGGAAAGTTCCCGTAAGGGAAAAGAAATTTGTATGTCATATTTGCCCGAGTCAGTTCTATGACGAACAAAAACTATCGAGGCACCTTTGTAGCCATTCGGGGCTTAAACCATTCCCATGTCATATGTGTGAAAAAAAATTCACCGACAAATCCTATTTGAAACATCACTTGAAGATCGCTCACAATATTATGGAAACTTTAAATGTGGAGTTGATGGGATAA
- Protein Sequence
- MDIEQCSICLEKYSSTVSVEDSDEYNVRWFTKLQFIVPELEWLEEYLICESCKKQLEQAWEFKKLVLNLEVERRLGLTKKETDPTEENSDCKDNCDGEYYYEEIKEVVCEICSKVFTTQTQVQQHKLQIHSDDNLSGEAPRNKDGLQTNIKNENILASTENISIVFSCYHCGKDFGTKEDLLFHIQKQHGEFKLCLICDKPCSNQAVLQSHMKNEHKIEIAKEFACCICLQKFESETKLNEHTQLCSYKFHCGKCQQGYSTKRLLNAHLISCKNQNTTNNTHECTCKNFYATERNLNLHKKWCAKEKEQEISHKGIPSYSCNICVVEFNCVEEYNSHNISKHDSGNTNESSPKAKTRRGRKPLRPFTCENCNEQFDYVKLVVKHCASVHGMKEKDVKAYSCDKCDMRFASSANLDQHRNYHERNRTHICSLCGKGFITKSDLTVHEYTHYNRRNYKCSQCDKAFNTNKNLRTHNLVVHTDRSLWKYGCTICEKRFPLKTNFDQHLRRHTGEKKYVCHICRKPFISKSELKRHVNLHSNIKAFKCNQCDKEYKERRTYHVHLAKMHGIGKVPVREKKFVCHICPSQFYDEQKLSRHLCSHSGLKPFPCHMCEKKFTDKSYLKHHLKIAHNIMETLNVELMG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -