Lqua032222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptura quadrifasciata
Gene Symbol
-
Assembly
GCA_963675555.1
Location
OY776676.1:47783654-47796999[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0048 0.89 12.2 2.0 1 23 330 353 330 353 0.94
2 11 7.2e-05 0.013 18.0 2.3 1 23 359 381 359 381 0.98
3 11 0.00046 0.085 15.4 0.4 1 23 398 421 398 421 0.97
4 11 1.5e-06 0.00028 23.3 3.9 1 23 427 449 427 449 0.98
5 11 0.00036 0.068 15.8 1.9 1 23 455 477 455 477 0.96
6 11 3e-05 0.0055 19.2 2.1 1 23 483 505 483 505 0.98
7 11 1.1e-06 0.00021 23.7 1.1 1 23 511 533 511 533 0.98
8 11 2.9e-05 0.0055 19.2 7.8 1 23 539 561 539 561 0.98
9 11 0.0023 0.42 13.3 3.5 2 23 568 589 567 589 0.97
10 11 0.00018 0.034 16.7 0.5 1 23 595 617 595 617 0.99
11 11 1.6e-07 3e-05 26.3 3.6 1 23 623 645 623 645 0.99

Sequence Information

Coding Sequence
ATGTCTCCGGTCGGTGAAGATGAAGAGAATAGTGCTACGTTGAAAATTACGAAAAGGTGTGAATTCTGTAATAGTAATTTCCGTTCATATGTGGAATGTATAAATTGTGGTTTCATTGTGCACGCAAAATGTTTTGAATTagtgtataaattttttaatattaaaaacaagtcGGAGTGGCAATGTAAACAATGTGTCCAAGGGCAAAAAGCCGAAGATATTCAGTTGATCGAAAATAAACAGCAGGACTTAAACAACACACCTGAGTCATCAAAAATAGACGTTGAATTTCAGAAGCGAGAGTTAGAACTGTTATATAATTTAAACGCTGAATTAGAGACTACCAACAAACTATTAAAATTACGCTTAAAAGACATCGATGCTGATTTTAAACACTCCTTTGATTCTCAAAATAATTCTGCAAAAACTAATCATCAGTCAGCTGCTAGCATAAATAACAAGGATACTTTATCGCATGATTCATACCGCGATAAACTAATGAAAGGAGAAACAGAAATGTCTGCTGTTCTTATTATTGAATCTAAACGCAAAAAAGTGGATATAAATACGTTTAAAAAGAATGTGAACCCAGCTGAAATAGGACCCGGTATTAATAGAATTACGCAAACCAATACAGGCAAAGTGGTAATAAACTGTGAAAATAATGATTATCTTCAAGCTGTTAAAACGAACTTGGAAAGAAAGATCGGCCCAGACTATCAAGTTAATATGCCCAATAAATTCTACccaagaattaaaatttataatgcaGAAACAACGTCCAAAACTGATGATGAGTTatgtaaagacattttaaaagaaaataaattggatCAGTTGGATAACAGCTCCTTTAAAATCCTGAAAAAAGAAACGAGACCCTCTGGAAATAATATAATTGTGGAAGGAGGAACTCTTCAGTATCCAGATGGTGCAGAAGCTGTAAAAATTAATGAACCGCCTGTAACAGAATCTTTAGAAACTCAATACCAGTGTGAACAGTGCGACAAAATGTTCACCTGTAAACAAAACCTGGATGTCCACAACCGTGCCGTACATAACCAAGAAAAGCCATTTTCTTGCGATAAATGCAGTAAAAGTTTTTCTTATGCTAACAGTCTCAAACTACATACACTTAAGCATGAAAAAGAAGATAAACTAAACAAGTCCGATATTAATTTTCCAAAGGAGTATCCCTGCGAAACCTGCGGTAAAGTGTTGCAACATCCTAGCAGCTTGCTTTACCACCGGGAAACAGAGCACAGCAATGGTAGAAGATTTGTCTGCAACAAGTGTGATAAAAGTTTTAAACATAGACAATTGCTTCAACGTCATCAATTGGTGCATACAGATGAACGTCCTTTTCATTGCCAACAGTGTGACGCATCGTTTAAGACACACGCCAACCTTATTAACCATGAAGCTGTACATAccggtaataaaaaatatatttgcagtCAGTGCGGTCAGAAATTCGCACATAGAACTTCACTTACACTTCATCAGCGATGGCATGAGGGACATAAGCCATATAGTTGTGATGTTTGTCATAAAGCATTTTCGCAGAAGGGAAATCTTGCTGAGCACAAAAGGATACATACAGGAGAGAAACCGTATTGCTGCGATCACTGTGGGCGGTCATTTACCACATCATCCCAGTTTAATCTGCATCGGAAGAGACATACAGGAGAACGACCATGGGTCTGTGAATACTGCTCGAAAACTTTCCTGCACAAAGATACATTCAAAACTCACGTACGTCGACATCTCAACGATCGACCTTTCAAATGCAAAAGTTGTCCAAGAGCCTTCACCGAAGGTTGGGCCCTCAAAAGACATGAGCGGACTCATTCAGGGGAAAAGCCATATACCTGTGAACATTGCGGAAAAACCTTCGCTGACAGTTCCAACAAATCTAAACATATGCGTACTCATAATACAGTGAATAACGTTAAACAAATCTACAGCAACAGTGACATAAAATCGGAATTTCACGGGTCAATGTTTGACGTGAAAGAGCATTCCTTATTACATGTTTTGGATCCAACCATGAATGTACAGAGACAGAAAATTGAGTTAGAGGTGCCCGATTTACACTTGACGCAATTGGTAGATCAGCAAGGGAACCCCATTAGCATTACAACTCAGGATGGGCAGACAGTGCCAGTTGTAACAGGTTCCAATGATGAAAATAGTATACAAGGACTTCTTCCTGATGGTACCCTAGTTCCTATTGAAATCACCGCCATGCAAGAAAAAGACCTGCTTCAGGAAGGAGATGAAGAAGAGGACAGTACAGCGCTACTAAATCAGGAAatccaaaatgaaataaatatctttaaagatgaagaaataataaaaaataatgttgatGAAAACCAAAAATTGGATACCAACATACAGTTTCTAACTGGGGAGGATGGTCAAGAAGTGTGTTTAGTTACGTATGCAATGGACGATAACAATAGTATTAATCAGGAATTGGGAATTGACACTTTCCTCATTCATAACATAAAAAAGTAG
Protein Sequence
MSPVGEDEENSATLKITKRCEFCNSNFRSYVECINCGFIVHAKCFELVYKFFNIKNKSEWQCKQCVQGQKAEDIQLIENKQQDLNNTPESSKIDVEFQKRELELLYNLNAELETTNKLLKLRLKDIDADFKHSFDSQNNSAKTNHQSAASINNKDTLSHDSYRDKLMKGETEMSAVLIIESKRKKVDINTFKKNVNPAEIGPGINRITQTNTGKVVINCENNDYLQAVKTNLERKIGPDYQVNMPNKFYPRIKIYNAETTSKTDDELCKDILKENKLDQLDNSSFKILKKETRPSGNNIIVEGGTLQYPDGAEAVKINEPPVTESLETQYQCEQCDKMFTCKQNLDVHNRAVHNQEKPFSCDKCSKSFSYANSLKLHTLKHEKEDKLNKSDINFPKEYPCETCGKVLQHPSSLLYHRETEHSNGRRFVCNKCDKSFKHRQLLQRHQLVHTDERPFHCQQCDASFKTHANLINHEAVHTGNKKYICSQCGQKFAHRTSLTLHQRWHEGHKPYSCDVCHKAFSQKGNLAEHKRIHTGEKPYCCDHCGRSFTTSSQFNLHRKRHTGERPWVCEYCSKTFLHKDTFKTHVRRHLNDRPFKCKSCPRAFTEGWALKRHERTHSGEKPYTCEHCGKTFADSSNKSKHMRTHNTVNNVKQIYSNSDIKSEFHGSMFDVKEHSLLHVLDPTMNVQRQKIELEVPDLHLTQLVDQQGNPISITTQDGQTVPVVTGSNDENSIQGLLPDGTLVPIEITAMQEKDLLQEGDEEEDSTALLNQEIQNEINIFKDEEIIKNNVDENQKLDTNIQFLTGEDGQEVCLVTYAMDDNNSINQELGIDTFLIHNIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-