Lqua057959.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776679.1:92113483-92118002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.8 3.4e+02 4.1 1.4 1 23 57 79 57 79 0.95 2 19 0.0013 0.25 14.0 1.3 3 23 85 105 83 105 0.96 3 19 3.4e-05 0.0062 19.0 1.6 2 23 118 139 117 139 0.96 4 19 4e-07 7.5e-05 25.1 2.8 1 23 145 167 145 167 0.98 5 19 1.5e-05 0.0028 20.1 0.3 1 23 173 196 173 196 0.97 6 19 0.093 17 8.2 1.7 1 23 202 225 202 225 0.92 7 19 0.0023 0.42 13.3 0.2 3 23 234 254 233 254 0.97 8 19 0.019 3.5 10.4 0.1 2 23 272 293 271 293 0.92 9 19 0.0014 0.26 13.9 1.2 1 20 310 329 310 332 0.96 10 19 9.1 1.7e+03 1.9 0.4 2 23 338 359 338 359 0.84 11 19 0.15 28 7.5 0.4 2 23 363 385 362 385 0.96 12 19 7.7e-05 0.014 17.9 0.2 1 23 396 419 396 419 0.97 13 19 4.7e-06 0.00088 21.7 1.5 1 23 428 451 428 451 0.97 14 19 0.93 1.7e+02 5.0 1.7 1 23 457 479 457 480 0.94 15 19 0.0011 0.2 14.3 5.4 3 23 494 515 492 515 0.95 16 19 0.034 6.3 9.6 0.9 1 20 520 539 520 541 0.93 17 19 0.0057 1.1 12.0 0.9 1 23 556 578 556 578 0.98 18 19 0.013 2.4 10.9 0.9 2 23 584 606 583 606 0.95 19 19 0.016 3 10.6 1.0 1 22 612 633 612 636 0.90
Sequence Information
- Coding Sequence
- ATGGAAGAAAAACCAATAAAAACGGAACTAATTAACGAGGAAAACTTTGACAATTCTGATTTTTCTAATGTTAAGAAGCATGTAAAAGAAGAGCTAGAGGACACTCCAGATTTTGTGAATGTTGACAATTTTGCAGGTGTTATACCTAAAGAAGAAGTTAGAGAAATATATCAGTGCGTTTTCTGCAAAAACAAATATGGAAAATTTGAGTATTTGCAAATACACGAATATATTCACGATGCTAGCAAACATTGCCCCATTTGTAACTTTACTTTCAAAGCAAAAAAGGATTTTATTGTACACATAAATGGACATATTAAAGAAAAGATGGAAGATGAAAGGAGGAGtttaatttgtaatttctgtCAGAAATCCTTTAAGAAAAGAAGAGCACTTACACTTCACTTGAGAGTTCACACTAATGAACGCCCTTATAAATGCCACATATGTGgtaaaacatttaaacaaaaagGATCCTTAACGGACCACAACATCACTCATACAAATGTCAAAGCATTTCCATGTGAGGTATGTTCAGGATCCTTCACCACTGCTTCAAGTTTGAGGAGACATGTAAAAAGGGTTCATGATGCGGGAAAAACTTATTTCTGCAAAATTTGTTCCAAAAAATTGGACAATTACACGCGTCTTCAGCAGCACAGGGCTGAACAGCATCCTGAAGCCAGCGACCGTCGTCCATGCCCTATTTGTCCCATGATACTTAAAAGTGcttatacatttaaaaaacatagaaaACTGCATGAAAGTAATGGTGAGATTCCGGAAGAAACTTTACCATCCAAAACAAAAAGCAGGTGTCCGTTGTGCGgtgaaatatttgtaaattataaattgtatttaGAACATAAAGATGAGCacttttattatagcaaagaggATTTTCAAAAAGCACAAGAGAATGAGTTGTTTAGTTGCAAATTGTGTCAACGGGATTTTCCAAGTAAAGAAGGCCTGTTTAAGCATATGCCGTTTCATATGGAAAAGACTGAGAAGTGTGATATTTGCCAAGAATTATACAGCTACTATGGATATGTGTACCACAAACGCAGAGTCCATTTGCCTCTAGAGTGCAAAATTTGCAAGGAAATTATCAAGGGTACAGGAAGGCTGATCCGTCATTACAGGTCTAAGCACGCAGGTGTAAATAAAATAAGAGACGGAAAGTATGCATGTAACATATGTGACAAGCCTTATAAGTCTAAATACCCGCTAGATATGCATATGCAAATTTATCATGGGAAAACTGATATTAGAGAGACACATAAGTGTGAAGTTTGTGGTAGACAATTTACGACGAGGGCAACACTTGAAAGCCATATGACTCGAGTGCATCCAACCAGTGCGAGGTTTAAGTGTGATTCTTGCAATATTCTACTCCAAAATCGTTCGAAACTACTGAAGCATAACGCTGTCCATCACCAAGGAACTGTAAAGAAACGTAAAAATAAGTCACACCTTTGTACACATTGTAACAAAGTGTTTCCCACTGTCGCTCTACTGGAACATCACAGAAAAACGAAACATAAAGTAACAAAGTATCAATGTAAAATATGCCTGAAATATTTCCGAAACTTAAGGTATCGAACGGTTCATCTCGAAAATAAAGTATGCACAAAGTTCTTCGAGAAAACAAAAAAAGACCTGTATAGATGTACCGTCTGTCGACGAAATTTTGGGTTTAAGACTTTCCTTGTTGATCATATGGTCGTGCACTCGAAATTCTATACAACGTGTAGGTTTTGCAATCAAACTTACTCGGCTACTTGGAACCTTAAAACGCACATTGAAAAGGTGCATCCTACTGAGAAGGTGTATTACTGTGGATTCTGTGACATGGAATTCGATGTGTTAAGCCAGTTAAGAATGCACAGACATTCATCCGCCCATAAAGCAAATGTTGAATGTATAATTGAAGTTGCGGAAGAATCTGACGTTAAGACTTGTAACAGTGAGGAAACGATCAAGGAAATGGAATATGTTGATGTGAAAAAGGAACCGTCAGATTAA
- Protein Sequence
- MEEKPIKTELINEENFDNSDFSNVKKHVKEELEDTPDFVNVDNFAGVIPKEEVREIYQCVFCKNKYGKFEYLQIHEYIHDASKHCPICNFTFKAKKDFIVHINGHIKEKMEDERRSLICNFCQKSFKKRRALTLHLRVHTNERPYKCHICGKTFKQKGSLTDHNITHTNVKAFPCEVCSGSFTTASSLRRHVKRVHDAGKTYFCKICSKKLDNYTRLQQHRAEQHPEASDRRPCPICPMILKSAYTFKKHRKLHESNGEIPEETLPSKTKSRCPLCGEIFVNYKLYLEHKDEHFYYSKEDFQKAQENELFSCKLCQRDFPSKEGLFKHMPFHMEKTEKCDICQELYSYYGYVYHKRRVHLPLECKICKEIIKGTGRLIRHYRSKHAGVNKIRDGKYACNICDKPYKSKYPLDMHMQIYHGKTDIRETHKCEVCGRQFTTRATLESHMTRVHPTSARFKCDSCNILLQNRSKLLKHNAVHHQGTVKKRKNKSHLCTHCNKVFPTVALLEHHRKTKHKVTKYQCKICLKYFRNLRYRTVHLENKVCTKFFEKTKKDLYRCTVCRRNFGFKTFLVDHMVVHSKFYTTCRFCNQTYSATWNLKTHIEKVHPTEKVYYCGFCDMEFDVLSQLRMHRHSSAHKANVECIIEVAEESDVKTCNSEETIKEMEYVDVKKEPSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -