Lqua044599.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776677.1:113413088-113414823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.54 1e+02 5.8 1.1 2 21 182 201 181 202 0.93 2 11 0.29 54 6.6 0.5 1 23 211 232 211 232 0.95 3 11 2e-05 0.0037 19.7 2.0 1 23 238 260 238 260 0.95 4 11 4.8e-07 8.9e-05 24.8 0.9 1 23 266 288 266 288 0.98 5 11 9.3e-07 0.00017 23.9 0.6 1 23 294 316 294 316 0.98 6 11 7.7e-05 0.014 17.9 3.9 1 23 329 351 329 351 0.98 7 11 8.6e-06 0.0016 20.9 0.5 1 23 356 378 356 378 0.95 8 11 1e-06 0.00019 23.8 1.0 1 23 384 406 384 406 0.98 9 11 5.5e-05 0.01 18.3 3.0 5 23 416 434 413 434 0.93 10 11 0.00013 0.024 17.2 2.0 1 23 440 462 440 462 0.94 11 11 7.7e-06 0.0014 21.0 1.2 1 23 468 490 468 490 0.98
Sequence Information
- Coding Sequence
- ATGTCTAATGAACAGGAATTAGAAATTCTTGAAAACAACAAATATGATGTATCACATAAAGACTTTGAAAGAATATGCAGATCTTGCTTAAGTAAAGATGGCAtggttaatatatttaattccaGTCATGAAGGTAGTTTGCtgattgaaatttataaaacGTTGTCTTTGTTACAGTTGCGTGAAAATGATGGAATGCCAAATAAACTATGCCCCTCTTGTGCCGATTTTGTAATGCAGTTCTATACCTTTAAAAAGCGAGCTTTGGAATCTGAACTCATTTTGCAAAATATCTGTGTAAAAGAAGAAACAGAAAGTGAACTAAGTTCGTTAAATGCAGATGTCAAAAGTGAATTGGAGCAAGGTAATGTTGATGTTAAGTTAGAAAAAAGGAAAGCTGATAGTTGCGAGAGTGAAAATGACAACTGTGCAGATGAAAATAACACTGAAGATGAAATGGAAGAAAATACCAGGAGAAAAGGAAAGACCAGAAAAATTAGGAAAACACAAAAAATGTTGACAAAGAAGCGAGATTCTAACCTAACTTGTTCATTTTGTAGCAGTACTTTTGATAGTTATATGGAATACAAGGTACATAGAAAAAAAGAAGCAGATCGGAGAAGAAAGAAATATCCGTGTTCAGTCTGTCAGAAACTAataagtacatataaattaaAAGATCACATTAATTCGCACACCAAAGAAAGACCATACCAGTGTGGTGTTTGTGGAGAAAGATTTCGCTTTAGATCTAGCCTTACAAGACATAATTTTAGGCATAATGAAAAAAAACCACATGAATGCCATATTTGTGGGAAAGGTTTTATCCAAGCTCCTACTCTAACAGATCATATACGGACACACACTGGTGAAAAATCTTTCATTTGCAATGTTTGTGGAAAATCTTTTGTAACTAAACATGCTCTTGGCAATCACataaatatgcataaaatacGGGATGGGAACCCAGATGGAGAATCAGATTTTAAATGTAAAACATGCCAAAAAGTATTTAGTTCAAAAACCATATTGAAAAATCACATGTTCACTCATAGTGAGAAAGAATTTTTATGCAGCGAGTGTGGGAaaaaattttctactaaagctttGTTAGACTCTCATGTAAAAGTACATTCCGGTATAAAGCCATATGTTTGTGAAGTATGCAATAAAGCTTTTTCTCAAAAAAACAGCTTACAGAAACACAATCTTACGCATACAGGTGAAAAACCGGTAATGTGTATTATCTGTGAGAAACGGTTTTCTCAGAAGGGTCACTTAACTTACCATATGAGGAAACATAGTGGAGAACGACCGTATAGTTGTATTTTTTGTGATAAAACTTTTAATCATACTGGTTCCTTAAAGGTTCATATTAGGATCCATACTGGTGAAAAACCGTttgtttgtgatatttgttcGAAAGGCTTCTACGATTCCAGTAGTATGAAAAAGCATAGAAAAATTCATGATGATATAAAGTCTGGATTAAACCTCAAAATGGAAGTACATTGA
- Protein Sequence
- MSNEQELEILENNKYDVSHKDFERICRSCLSKDGMVNIFNSSHEGSLLIEIYKTLSLLQLRENDGMPNKLCPSCADFVMQFYTFKKRALESELILQNICVKEETESELSSLNADVKSELEQGNVDVKLEKRKADSCESENDNCADENNTEDEMEENTRRKGKTRKIRKTQKMLTKKRDSNLTCSFCSSTFDSYMEYKVHRKKEADRRRKKYPCSVCQKLISTYKLKDHINSHTKERPYQCGVCGERFRFRSSLTRHNFRHNEKKPHECHICGKGFIQAPTLTDHIRTHTGEKSFICNVCGKSFVTKHALGNHINMHKIRDGNPDGESDFKCKTCQKVFSSKTILKNHMFTHSEKEFLCSECGKKFSTKALLDSHVKVHSGIKPYVCEVCNKAFSQKNSLQKHNLTHTGEKPVMCIICEKRFSQKGHLTYHMRKHSGERPYSCIFCDKTFNHTGSLKVHIRIHTGEKPFVCDICSKGFYDSSSMKKHRKIHDDIKSGLNLKMEVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370079; iTF_01290610;
- 90% Identity
- -
- 80% Identity
- -