Lqua057963.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776679.1:92128629-92130805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0069 1.3 11.7 1.7 1 23 67 89 67 89 0.94 2 19 0.0017 0.32 13.6 0.1 2 23 94 115 93 115 0.96 3 19 0.4 75 6.2 2.5 2 20 121 139 120 142 0.93 4 19 0.00082 0.15 14.6 0.2 1 23 148 170 148 170 0.98 5 19 2.1e-06 0.0004 22.8 0.1 1 23 176 199 176 199 0.93 6 19 5.8e-05 0.011 18.3 0.3 1 23 211 234 211 234 0.98 7 19 0.69 1.3e+02 5.4 0.4 1 23 240 263 240 263 0.88 8 19 0.38 71 6.3 4.5 2 23 271 292 271 292 0.97 9 19 0.61 1.1e+02 5.6 0.0 3 23 308 328 306 328 0.96 10 19 5.1e-06 0.00094 21.6 2.1 1 23 345 367 345 367 0.97 11 19 2.6 4.7e+02 3.7 0.6 1 12 372 384 372 386 0.91 12 19 9.1e-05 0.017 17.7 5.5 1 23 398 420 398 421 0.95 13 19 0.00042 0.079 15.6 5.5 1 23 426 448 426 449 0.96 14 19 0.003 0.55 12.9 2.2 2 23 452 474 451 474 0.96 15 19 0.0014 0.26 13.9 5.8 1 23 505 527 505 527 0.98 16 19 0.53 99 5.8 0.7 1 17 532 548 532 553 0.78 17 19 0.00048 0.09 15.4 2.3 1 23 568 590 568 590 0.98 18 19 0.0096 1.8 11.3 2.6 1 23 594 616 594 616 0.97 19 19 0.00074 0.14 14.8 1.8 1 23 622 645 622 645 0.96
Sequence Information
- Coding Sequence
- ATGGAATATAATGTCCAATGTGCATTACCGATGGCCAACCAACAAGAAAATCTGACATTATTGCTTCCTCATATTAAAACTGAGAAAGATTATCCTGAGTTCGTTAATGATAGTGATTTGTCTAATCCAAAAATCGAGGATAATCTAGAAAAGGATGTAAAACAAGAAAATAGTGAAAAATCCACAACTAAAGTGAATCATTACTGCAATCACTGTGGAGAAGTATTCTCTGAGTTCAAATATGTACAAGTTCATGAAGCTATACATGGCTCGAAATTGGTTTGTCCTGCATGTGACAGAATTTTCAAAACTGAAAGATACTTTGTTCAACACATAGAATCACATTTAAAAAATCCTTTGACATGTCAACAATGTCCAGAAATATTTTTCGACAAAAGATCATATAATTTGCATTTATATTGCcatagaaaaattaaaacatacattTGCGAATATTGCTTGAAAGAATGGTCAAATAAAAAGGACTTACAAATACATATAAGGGTCCATACAAACGAAAGACCCTATCCCTGTGAGGTCTGTGGCAAGTCGTTTAAGCAGAAGGGTGGTTTAAGGGCTCATGTAGATAATTTACATTCGGTGCAGACAAAGAAGACTGTTAAGATGAAATATCCTTGTGACATTTGTAATGGCTCTTACTCATCAGTATCAAGTCTAAATAAACATACTCGAAAAATTCACGAGTTGGGGAAGACATTTCCTTGCCGACAATGTGGCGAACCATTTCTAAACTTCTTCCAGATGAAACAGCATAAAATAGAGGCACATCCAGAGTTGGTTTACAGTAGAACTTGCCAACTATGTAGTCAACAGTTCACTTGTAGAGAGACTTTCATAAAGCACCAGCGTGTACACGCGGAGGCTGGCCAAGATATAGACACTTTTGTAACACCTATAGATTGTTACCTTTGTGGCGAGGAAGCCGTTGGGAGAAAAGCATTTGCCAAGCATCAACAAGTTCATCTATTAATGACAGACGAGGAGATAGAGAAGTGCACAAGAGCAAAAGAATTCAACTGTAAAGTGTGTGGGAAGATGTACAATTTTAAGAAGAACCTTTTCCGGCACATGGATATACACTTAGATAAAACTTACGAATGTAAATTACACTGCACGGAAAAATTTACTTACTTGGGTATCAGGCTTCACAACGAGTGGCATTTTCATCAGTTCCACTGCAGCCAATGCGATGAAACCTTTGTCGGGAGAAAAAATTTGAAGAAGCATTACAGGATACATCACAAACAGGTTAAGTTTACGTGTAAAATTTGCGGGCACAAATTCAGGTACAGACAACTGCTTGTAACTCACTGGAAAATGCACCACAACTTGAAGTGTCAATTGTGTCAAACTCAGTTTGTAACGCATCTGGCGCTTAGAAGACATATCAAAATAAAACATAAAGTGAATTATACCCCTGAGCGCGTTATTATTCGAGTGAGAAGAGTATCAGAAAATAAAGTACAAAATGCGGACAAGCGTGTTACCAAATATAATTGCAAGACTTGTAAATCATCGTTCTGCACAAAGAATCTACTAAAGGACCATATGAAATTGCATAAGAAAAAGTGTTATCAATGTGACAATTGCAAGAAAAACTTCTTATATCTTAGAAATTTGATGTTTCACGTGCGGCAAAATATTTGCCTTAAATATCACGATAATAGAAAGGATAGATATTTTATTTGCACTTTATGTAACAAAGAGTATAGTACCATTCAGTGTTTATCTTCCCACATGCGTATCCACATTACGATCTACAAGTGTAAGTTTTGTAATTCAAAGTTTAAGCAGAAGGATCTGCAAGAACATATCAACAGGGCACATCCTTGCGAGGCCAAGTTTGTTTGTGACAAATGCACCTCACGTTTCAGCTCCGTTAGCGAATTAACCAAGCACGAAAGATATTTTCATAGAAGGGATTTAATTAAACGTGAAATAGATGATAACGTTACAGACCAAACTTTGAGGAACGATGGTGGCGTTGAAGTAAAAATCGAACAAGAAAACGAAGACGGCAAACTACCTAATGGTGATTCACATTGGATTAAAGAAGAGCCCAGATACTCATAA
- Protein Sequence
- MEYNVQCALPMANQQENLTLLLPHIKTEKDYPEFVNDSDLSNPKIEDNLEKDVKQENSEKSTTKVNHYCNHCGEVFSEFKYVQVHEAIHGSKLVCPACDRIFKTERYFVQHIESHLKNPLTCQQCPEIFFDKRSYNLHLYCHRKIKTYICEYCLKEWSNKKDLQIHIRVHTNERPYPCEVCGKSFKQKGGLRAHVDNLHSVQTKKTVKMKYPCDICNGSYSSVSSLNKHTRKIHELGKTFPCRQCGEPFLNFFQMKQHKIEAHPELVYSRTCQLCSQQFTCRETFIKHQRVHAEAGQDIDTFVTPIDCYLCGEEAVGRKAFAKHQQVHLLMTDEEIEKCTRAKEFNCKVCGKMYNFKKNLFRHMDIHLDKTYECKLHCTEKFTYLGIRLHNEWHFHQFHCSQCDETFVGRKNLKKHYRIHHKQVKFTCKICGHKFRYRQLLVTHWKMHHNLKCQLCQTQFVTHLALRRHIKIKHKVNYTPERVIIRVRRVSENKVQNADKRVTKYNCKTCKSSFCTKNLLKDHMKLHKKKCYQCDNCKKNFLYLRNLMFHVRQNICLKYHDNRKDRYFICTLCNKEYSTIQCLSSHMRIHITIYKCKFCNSKFKQKDLQEHINRAHPCEAKFVCDKCTSRFSSVSELTKHERYFHRRDLIKREIDDNVTDQTLRNDGGVEVKIEQENEDGKLPNGDSHWIKEEPRYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -