Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776679.1:11802828-11808966[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.026 4.7 10.0 1.6 3 21 8 27 6 28 0.86

2 14 2.8 5.1e+02 3.6 0.1 1 12 137 148 137 151 0.89

3 14 0.11 20 8.0 5.2 1 21 287 307 287 308 0.95

4 14 0.0018 0.34 13.6 2.7 1 23 316 338 316 338 0.99

5 14 6.3e-05 0.012 18.2 1.6 1 23 356 378 356 378 0.99

6 14 0.13 25 7.7 0.7 1 23 409 430 409 430 0.86

7 14 1.6e-05 0.003 20.0 0.8 1 23 436 458 436 458 0.97

8 14 0.0001 0.019 17.5 0.3 1 20 464 483 464 485 0.95

9 14 2.8e-05 0.0051 19.3 2.3 1 23 492 514 492 514 0.98

10 14 7.5e-06 0.0014 21.1 3.3 1 23 520 542 520 542 0.98

11 14 0.002 0.38 13.4 8.6 1 23 548 570 548 570 0.98

12 14 2.3e-06 0.00043 22.7 0.4 1 23 576 598 576 598 0.98

13 14 6.1e-05 0.011 18.2 0.1 1 23 602 624 602 624 0.97

14 14 0.00028 0.052 16.1 0.1 1 23 632 655 632 655 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.026	4.7	10.0	1.6	3	21	8	27	6	28	0.86
2	14	2.8	5.1e+02	3.6	0.1	1	12	137	148	137	151	0.89
3	14	0.11	20	8.0	5.2	1	21	287	307	287	308	0.95
4	14	0.0018	0.34	13.6	2.7	1	23	316	338	316	338	0.99
5	14	6.3e-05	0.012	18.2	1.6	1	23	356	378	356	378	0.99
6	14	0.13	25	7.7	0.7	1	23	409	430	409	430	0.86
7	14	1.6e-05	0.003	20.0	0.8	1	23	436	458	436	458	0.97
8	14	0.0001	0.019	17.5	0.3	1	20	464	483	464	485	0.95
9	14	2.8e-05	0.0051	19.3	2.3	1	23	492	514	492	514	0.98
10	14	7.5e-06	0.0014	21.1	3.3	1	23	520	542	520	542	0.98
11	14	0.002	0.38	13.4	8.6	1	23	548	570	548	570	0.98
12	14	2.3e-06	0.00043	22.7	0.4	1	23	576	598	576	598	0.98
13	14	6.1e-05	0.011	18.2	0.1	1	23	602	624	602	624	0.97
14	14	0.00028	0.052	16.1	0.1	1	23	632	655	632	655	0.96

Sequence Information

Coding Sequence: ATGGGAACGTTATCTCTAAGCTGCCCTTTTTGCTGCGATGAAACGTTTTCATCCCACAGCTCTCTAAAATATCACATTCTTAGTATAATTGACAATTTATTGTGTCCAGCATGCGGTCAGCGGTTGGATAGTATACTAGAATTAGCGGAACACTTGGGTAGGGAATGTAAAGAAAAGGAAATCGATCCACCCCCTTTAATACCAATCATACGTTCAGTTTACGTTAAAGAAGAAGCAAATCAAGATTCAATGGAACCTGAGGACACCAACTCTCCTATGGTTTTATTAAATCCTAAAATAGAAGCGGAAGATGGTAACGATGAAACTAGCAGTATTTTGGAAAAAGCTTTATCGAAACCTAGAAATGAGGATGTTCCCCAAAATGAACCTGAAGATGTAGTTGCATTGTATATGTGCCAGATGTGTAATATGAATTTCAACTCCATTGAAGAGCATTTAGAGAAGTATCATGATGGCGaagaaattatttatGAAACTGATGAAAACGAAATGCAACAAATTGAAGAGCAGAATTCTGAAGCAGCCGAAGAAGAAGAAGGAGGTACAGATATAGAAGAAAACATGTTCGCACTGAACGAGGATGAAGAATCGGAAAATGGGGACGTTGATGAGGACAAGGTTAACCAAACGGTAGAGGAGCAACAGTGCCTGGACAAAGACGGTCGTGTTTACACCAGAAGAGTGGTGAAAATTGATAAATTCTGGATGGGAAAAAACGAAAATCAAGATAGCGATGGTCCCATGACCGAAAAATATGTGCTTGAAAATGGCAAAATCCGGAAGATCTCGGACGAGGAAGGTGAATTAATAGATGACAAAAACTCTATCATTCAAATTCACCAGTGTCCGAAGTGCTTCCTGCAGTTTCCCAATTTAAACCACTACAAGAAGCATTTGTGTGATCCCACAAAGGtcaaaaacaaattcaaatgcAGCCACTGCACAGCAGTTTTTCTGAACTACCAGTCTCTGACGGCTCACATGAAATCCCACATAATGAAAGATCCCACGGGAAAAATTAAGAGAGTCGTCACATTAGGCCCCTACACTTGTGATATTTGTAACACTATGTTCCCGTCTTTTAAAAGTTTACGGCTACACAAGAGAATGCACGACCCAATCAAAGATAAGGTCCTCGAGTCCCCTGTAAATTACAGTATCACGGGACCCATAAACGAAAGCAGGGAAATTGTGCGGCAAATGTTCATCTGCAGCATATGCAATAAGACTTACGACAAGGAGTACGAAGAGATACACACAAGGTCGCACAGTCAGGAGGACAACTATGATTGTTCTATATGCAACCGCAAATTTTACACTAAAGAAAACTTGGAGATGCACGTGAAAGCTCACAGTAACGGTAAAAAATTTGTCTGCTCCTACTGTAAGAAGCCCTTCACAACTTACGATGCACTACAAGAGCACGTGACGAACCTGTGCCAAAAACGGCAGTACGAGTGTCAGTATTGCGGCAGGCGATTCTCTAGACCTCACGAGAAAGTCAAACATGAAAGGATCCATACCGGCGAGAAGCCACACGTATGCCAGATCTGCGGTAAAGCGTTCCGCGTCAGCTACTGCTTGACGCTTCACTTGCGGACTCATTCGGGTACTAGGCCGTACCATTGCAACACGTGCGGGAAAAGATTCAAGTCGCACAGTGTGTACAACCATCACTTGCTTACTCATTCTGACGTTAGGGCTTACAAGTGCCCCTATTGTCCCAAAGCATTTAAAACGAGCGTGCAGCTCGCAGGCCATAAAAACAGTCATATTAAACCGTTCGCCTGTACCGAATGCAACAGACCGTTTGCGTCTTTGTATGCGGTTAGGGCTCACATGGAAACGCACaagagagaaaataatctgaAGTTTGATTGTTGGTTGTGCGGAGCAACTTACGCCAGGGCGTTTGCTCTTAGGGATCATATGAAGAGCCAACATGCGGGGGAGAATATGAATGTGGACGATAACGTTTTAATTGAATTAGAAACGAATGAGAGCACTAATCAGATCGAAAACCAAATGAATATTGGTATCGATGATCAGATGGAAATGAAGGAAGCGGCTTAG
Protein Sequence: MGTLSLSCPFCCDETFSSHSSLKYHILSIIDNLLCPACGQRLDSILELAEHLGRECKEKEIDPPPLIPIIRSVYVKEEANQDSMEPEDTNSPMVLLNPKIEAEDGNDETSSILEKALSKPRNEDVPQNEPEDVVALYMCQMCNMNFNSIEEHLEKYHDGEEIIYETDENEMQQIEEQNSEAAEEEEGGTDIEENMFALNEDEESENGDVDEDKVNQTVEEQQCLDKDGRVYTRRVVKIDKFWMGKNENQDSDGPMTEKYVLENGKIRKISDEEGELIDDKNSIIQIHQCPKCFLQFPNLNHYKKHLCDPTKVKNKFKCSHCTAVFLNYQSLTAHMKSHIMKDPTGKIKRVVTLGPYTCDICNTMFPSFKSLRLHKRMHDPIKDKVLESPVNYSITGPINESREIVRQMFICSICNKTYDKEYEEIHTRSHSQEDNYDCSICNRKFYTKENLEMHVKAHSNGKKFVCSYCKKPFTTYDALQEHVTNLCQKRQYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYHCNTCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHIKPFACTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALRDHMKSQHAGENMNVDDNVLIELETNESTNQIENQMNIGIDDQMEMKEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296732;
90% Identity: -
80% Identity: -