Lqua059116.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776680.1:12324315-12330453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00057 0.11 15.2 1.6 1 23 30 52 30 52 0.97 2 13 6.7 1.3e+03 2.3 0.6 2 23 100 128 99 128 0.81 3 13 0.023 4.2 10.1 2.3 2 23 138 160 137 160 0.95 4 13 1.8e-06 0.00034 23.0 0.5 1 23 189 211 189 211 0.99 5 13 0.00015 0.029 16.9 1.4 1 23 217 239 217 239 0.93 6 13 9.2e-07 0.00017 23.9 0.2 1 23 245 267 245 267 0.99 7 13 0.013 2.4 10.9 0.1 1 23 273 295 273 295 0.94 8 13 1.6e-05 0.0029 20.1 2.4 1 23 301 323 301 323 0.98 9 13 4.3e-05 0.008 18.7 0.3 1 23 329 351 329 351 0.96 10 13 1.2e-05 0.0022 20.5 4.1 1 23 357 379 357 379 0.98 11 13 8.8e-07 0.00016 24.0 3.1 1 23 385 407 385 407 0.97 12 13 1.3e-05 0.0024 20.3 0.4 1 23 413 435 413 435 0.96 13 13 0.00058 0.11 15.1 1.2 1 23 441 463 441 463 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAGAAGCACGAGGAAGAAATCtataaaaaagaaatgaaaataaaggATTTAGAATTAGAAATACTCTTAGAGAAACGAGattatcaaTGCGACCAATGCGAGAAAAACTTCTGTAATGAAGAATTTTTGAAGTTGCATGCCGAGGTTCATCAAGAGAAATATTTCCTGCATGGCATTTTTAGTTCGGAAAAATCGTTTTCTAACACAATATTATTGAGCGACATCAACGACAGCTATTTGGAAAAATGTAGGACAACAGTATCCGTTGAAAGTACAAATTCCTCCAAATTCGTTTGCCATTATACTGACAAGAGCGGTAAGAAATGCTTGCAGAGGTTTGGAGAGAAAGTTGGGCTTGAACTTCACGTGAAGGCGCACGTAGATATGGGCGAAGTGCAACAGGTCCAATGCCATTTATGTAGGACATATTTTGGGGATCACCAGGAGTTATTTGCCCACATGAGTCAAGATCATAGCGATTATGAGACCAACGTTTTAGGTTTCGACGAGAACATGACCCGCTGCAGGGAAGTGGTGAAAGGCAAAGAAATGACTGTCTTCAAATGCGGGATTTGCGCCAAATTTTTCCCAGTCCCCAGCAAATTAAGGTCGCACATGCGCACGCACACAGGAGAAAAGCCCTTCAAGTGTGAAGTTTGCCACAAATCCTTTGGTAGCGCTGGTAGCCTGAGAGACCACAGCTATCTTCACACCAGCGATAAACCTTTCAAGTGTGCCATCTGCGAGAAAGGGTTCACGAAGAATAGCGCACTAGAGGATCACATCCGGTCACACACCGGTGAGAAGCCATACGAGTGCAACATCTGTAAGAAAAAATATGCCACCATCGTGATCCTCAACCAACATTTGCTGGCCCACTCAAAGGAGAAGCCCTTTATGTGTGACGTGTGCGATAAGAGTTTTGTTTACCTGTGCAACTTGAAATACCATATGGTTACGCATACGGGAAGTAAGCCTTTCGCTTGTAATTTGTGCGAAAAGAGTTACGCGCTGAAGAGCGCTTTGAAAACGCACATGATGGATCACACAGGGGAAAAGCCGCACAAGTGTCAGTTTTGCCCAAAGCGGTTCACCACTGTGAGCAGCCTGAAGAAGCACGAACGCGTTCATACAGGCGAGAAGCCGTATTGCTGCACCATCTGTAATAAGGGCTTCAGCCAGAGTAGCTCGTTAAGTCGTCACATGGACTCGCATACCGGAGAGAAGCCCTACTTGTGCACTATTTGCAATAAGGGTCTCACGTCTGCCAGTTATTTGAAGGTACATTTGCGAATGCATAAAGGGGAACCGCCGTACCAGTGTAAACAGTGCGATCAGACTTTTACAGTGTTGCTCAAATATAGGGCTCATTTAAAGGGACATAAAAAAAGAAAGAACAATGGGGCGATGGAGGTTGTAGAGGAAAGTGTGATAAAAAAGGAAAGTGGAGGCTTCGAACAGGTGGATATTAAAGAGGAAATTAGTTGGTAA
- Protein Sequence
- MKKKHEEEIYKKEMKIKDLELEILLEKRDYQCDQCEKNFCNEEFLKLHAEVHQEKYFLHGIFSSEKSFSNTILLSDINDSYLEKCRTTVSVESTNSSKFVCHYTDKSGKKCLQRFGEKVGLELHVKAHVDMGEVQQVQCHLCRTYFGDHQELFAHMSQDHSDYETNVLGFDENMTRCREVVKGKEMTVFKCGICAKFFPVPSKLRSHMRTHTGEKPFKCEVCHKSFGSAGSLRDHSYLHTSDKPFKCAICEKGFTKNSALEDHIRSHTGEKPYECNICKKKYATIVILNQHLLAHSKEKPFMCDVCDKSFVYLCNLKYHMVTHTGSKPFACNLCEKSYALKSALKTHMMDHTGEKPHKCQFCPKRFTTVSSLKKHERVHTGEKPYCCTICNKGFSQSSSLSRHMDSHTGEKPYLCTICNKGLTSASYLKVHLRMHKGEPPYQCKQCDQTFTVLLKYRAHLKGHKKRKNNGAMEVVEESVIKKESGGFEQVDIKEEISW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -