Lqua051744.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776678.1:102088683-102100341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00044 0.082 15.5 0.1 3 21 154 172 152 173 0.93 2 12 3.6e-05 0.0067 18.9 4.0 1 23 181 203 181 203 0.99 3 12 5.6e-08 1e-05 27.8 0.5 1 23 209 231 209 231 0.98 4 12 6.1e-06 0.0011 21.4 2.6 1 23 237 259 237 259 0.99 5 12 0.00041 0.076 15.6 2.6 1 23 265 287 265 287 0.98 6 12 0.0078 1.4 11.6 0.2 2 23 298 319 297 319 0.97 7 12 0.00017 0.031 16.8 1.1 1 23 327 349 327 349 0.97 8 12 2.6e-07 4.9e-05 25.7 2.3 1 23 355 377 355 377 0.98 9 12 1.1e-05 0.002 20.6 0.8 1 23 383 405 383 405 0.98 10 12 7.6e-06 0.0014 21.1 1.1 1 23 411 433 411 433 0.98 11 12 3.5e-05 0.0065 19.0 0.8 1 23 439 461 439 461 0.98 12 12 0.00051 0.095 15.3 0.6 3 23 469 490 467 490 0.96
Sequence Information
- Coding Sequence
- ATGGCTCTTAATTACGAAGGTTTTTTTATAAAGGAAGAACCTAAAGAAGATAACGAAGATGTAACAGAATTGAGTAAACTGATTCCTAACTTTAGTGTGAAATTGGAGGATGATACATTTTTACAAGATAAACCagaatttgttaacttgcaaagtAGTACAAATTGTTATAATGGATATGAAATGGACAGAGAAGATGTTTTCTTTGATAATATAACTTGTATTGATGAAAATGACAAGACTGTGGCCAAAGAGAACGAGCAGAGCAATTATGAGAATGGCAAAAGCACAGATGTGAGTTTAAATGTAGATGATACAGTTCTTGAAGATATTTCCGATACAGTTCCTAATATTAGTCAAGAAGGGAGCGATGGTATGCAAGATGCTGCGCAGACTAGTTCTTGTGAAGTAGGTTCCGATGATAGTTCTTCAAGTGATGAGAATGATGGGGAATCTATCTGTAAAGTCTGTAAGAAAGTATTTATAGATGAGTATGAGTTACAGTTACACTATAAGTCTAGAAGACTTctcgaaaaatgttataaatgttgtGGTTGCGAAAAAATGTTTCGAGATAATACACAGTTGAATGTGCACTCAAGAAAACACACAGGGGAACAGCCATATGCTTGCAAAGTTTGTGGGAAAAAATTTTCTGTTAATGGTAACTTGAGTAAACATATGCGTATTCATACTGGAGAAAGGCGATATGAGTGTGATACATGTGAGAGGAAATTTACACAGTTTGCTCATCTGGAGGATCACATGAAAACACATTCAGGTGATAGACCATTTGTTTGTGACTTCTGCAACAGTGCCTTCAAGACGAAAGCTAGACTGAGGAAGCACAGGAAGTCCCACGAAGATGATAAAGTAACAAAACGGTCTGTACCGTGTCCTGTATGCCTCAAAATGATGAAGAGCACTAAGCAACTCATAACGCATATGGAAACTCATGATAATGGTTCTAATAATCCATTTCCTTGCAACATTTGTGGAAAGAGCTATAAAAATTTgttctatttaaattttcatctgaAAGTTCATGGTGGTATTAAAGATTTCAAATGTAGTTTATGTGATAAGGCCTTTGCTAATGCAAGCCATTTAAGAAGACACACCAACTCTCATACAGGTATAAGACCGTTCAGTTGCGAATTATGTATGAGAGCGTTCCCCTCCCAACAAAATCTTAAACGTCATATGATGACCCATACGGGAGAGAAACCCTTCAGTTGCCAAGACTGCGGCAAAGGGTTCTTAACATTGGAAAACCTAAACCGCCACAAACGAACTCATACTGGTGAGAAACCGTTTCCATGTGGTATCTGCGGGAAGTTTTTTGCACACAGTACAACAGCCAAAGAACACCAGAGGATCCATACTGGAGACAAACCTTTTGGTTGCAGCCTGTGTGATAAGAGGTTTGCACTCAATAAAGCACTCTACAAACATATTCGAGAACGGCATCCCCATTTTTTCCCAGAATTTAAGAAAATGAACGACCTGCCGCCTAACATGAAGAGAGCAAGGGAGAAAATTAAAAAGGAAGCATTATTGTATGAAGAAACTGACATAAAAAACGTGAATGTTGCTAATAATTTTGCAACAGTTACTTTAAGTTCCAACAACACGAGTGAAGTTAAAAATGAAATAGTTAAAAAGTGGGATAGTTCGGATACAGAAGAAGTGACAAATGAAATTCCCTTTATAAAAGTTGAGAAACAAGAGTACGATTGTAGTTCTGTAGGTCaggaaaatgtataa
- Protein Sequence
- MALNYEGFFIKEEPKEDNEDVTELSKLIPNFSVKLEDDTFLQDKPEFVNLQSSTNCYNGYEMDREDVFFDNITCIDENDKTVAKENEQSNYENGKSTDVSLNVDDTVLEDISDTVPNISQEGSDGMQDAAQTSSCEVGSDDSSSSDENDGESICKVCKKVFIDEYELQLHYKSRRLLEKCYKCCGCEKMFRDNTQLNVHSRKHTGEQPYACKVCGKKFSVNGNLSKHMRIHTGERRYECDTCERKFTQFAHLEDHMKTHSGDRPFVCDFCNSAFKTKARLRKHRKSHEDDKVTKRSVPCPVCLKMMKSTKQLITHMETHDNGSNNPFPCNICGKSYKNLFYLNFHLKVHGGIKDFKCSLCDKAFANASHLRRHTNSHTGIRPFSCELCMRAFPSQQNLKRHMMTHTGEKPFSCQDCGKGFLTLENLNRHKRTHTGEKPFPCGICGKFFAHSTTAKEHQRIHTGDKPFGCSLCDKRFALNKALYKHIRERHPHFFPEFKKMNDLPPNMKRAREKIKKEALLYEETDIKNVNVANNFATVTLSSNNTSEVKNEIVKKWDSSDTEEVTNEIPFIKVEKQEYDCSSVGQENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290607; iTF_01370069;
- 90% Identity
- -
- 80% Identity
- -