Lqua000651.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776673.1:10754440-10773861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0029 0.55 12.9 0.7 2 23 184 205 183 205 0.95 2 16 0.00013 0.024 17.2 0.5 1 23 211 233 211 233 0.98 3 16 0.00025 0.046 16.3 0.3 2 23 240 261 239 261 0.97 4 16 4.1e-06 0.00076 21.9 3.6 1 23 267 289 267 289 0.99 5 16 3.7e-06 0.00068 22.0 0.4 1 23 295 317 295 317 0.96 6 16 6.2e-07 0.00011 24.5 2.1 2 23 324 345 323 345 0.97 7 16 0.00011 0.021 17.4 2.6 1 23 351 373 351 373 0.96 8 16 0.0009 0.17 14.5 1.4 2 23 546 567 545 567 0.93 9 16 5.8e-05 0.011 18.3 0.3 1 23 573 595 573 595 0.98 10 16 0.02 3.7 10.3 5.3 1 23 784 806 784 806 0.93 11 16 8.3e-05 0.015 17.8 0.4 1 23 812 834 812 834 0.98 12 16 5.4 1e+03 2.6 0.7 1 11 840 850 840 853 0.86 13 16 6.9e-07 0.00013 24.3 1.4 2 23 874 895 873 895 0.97 14 16 4.9e-05 0.0091 18.5 1.3 1 23 901 923 901 923 0.97 15 16 2.9e-06 0.00055 22.3 1.1 1 23 929 951 929 951 0.99 16 16 0.00075 0.14 14.8 7.4 1 23 957 979 957 980 0.96
Sequence Information
- Coding Sequence
- ATGTTAGAGTTGTGCCGAATATGTCTATCAGATATAAACGAGCCCCAGTGTGTTAATATATTTGTCAAGATTAACAATAAATCAGTGCTAGAGATGATAAAAGAGTGTTCCTCAATACAGGTTTTAGAGAAAGATATTTTACCAAAATATATTTGCACAAAGTGTGCAGAAAAACTAAATTGTCTATATGAATTTCGTGACCTAATAATTAAATCagatttgaaattgaaaaaaaatcttGAGGCTAAGAAAAATCTGTGTAAGAATCAAAATAAATCAATTGAAGAGGGTGAACATTATCACAGAAATGAAAATTGGGATGGGGATGAAGGAGAATTTATAATCAAAGATGAGTTAAATGAATTCTCCATAGAAGATAACTTGAAAGAAGAGAtctcagatatcgatttggaaGTTACTGAATCATCTGACGCTGTCACAATATCAGAGGAATCTGCGACAAAAATTGAGAAAACGCGAAGAAAAGCCCTAAGGGCTACGAAGGATGAGAAACTTATTATGAAGCGAAAAAAGAAAAGACGAGTTTTAGAATGCCAGGAATGCAATGAAACTTTCAAATCTATATATAGCTTTACAAGTCACAACATTATGCACACTGGTGTTCAACCGTTCTCTTGTTTATTCTGTAATAAAGGGTTTCCCACAAAGTGGGCGTTAACATTACATACCAGGGTTCACACAGGCGAGAAACCATTAACATGCGATGTGTGTCAAAAAAAATATGGATCACCCAGTGGCCTAATATTACATAAAAGAACCCATAATGGTGTGAAAAAATTCCAGTGTAATGTCTGCAAGAAGGCTTTTTATCAATCTTGTCAGCTGGAGGTGCACATGCGTCGTCATACTGGGGAGAAACCATACATGTGCGAAATATGCAGTAAGACTTTTGGTGACAAAAGTAATTTAATTAGGCATGGGGAAAGACATCAACagGGGAAGGAACTGCCTTGTCCTACGTGTGGAAAAACTTTCAAACGCCAAACATGCCTCCAAGCACATATCAAAAGACACAGTGGACTGAAGCCTTTTAGCTGTGATGAGTgcaatcaaaaatttacaaagcAAACCAGCCTAAACAGACACAAGCTGCTTCATACTGGCATCAGACCATATAAATGTAAAGTTTTAGAAGGTGATATTTTGCCAAAACATATTTGCACAAAGTGTGTACAAGATCTAAATCAAGCACATGGATTTCGTAACCTTATAATTAAATCggatttgaaattgaaaaaaagttTTGAAGCTAAAAAAGAACTTTATAGAGATCAAAATAACTCAGCTGAAATAAATGAACACTGTCATATTTGTGATGAGGATGaggaaaaatttgaatttaagttcAATGAATTGTCAGCAGAAGGTGTGAAAGAAGACGAGGTTTCTGTTAAGATTGCCGCATCAGTTGAAACTCTCATATTACCTGATAAATTACCAATAGAAACAACGAATCAACCTGAGAAATTAGCGACACAACCCGAGAAATTGAGGAATGAACCTGAGAATTTAACGACGGAAGATGAGAAGaataacacagaaattttaaGTAAGCCCCTGAAAGTTACAAAAGATGAGAAATTAAttgaacaaaaaagaaaaaaagcttTATTGAAATGCAAACAATGCAACGAAACATTTAGATCTGGATATAGCCTCAGAAGGCATAATATTTTGCATACTGGTGTGCTACCATATTCTTGTGAATTTTGTAATAAAGGGTTTCCTTCAAGGTGGGGGTTAACTATACATACCAGAGTTCATACAGGGGATAAACCATTGGAGTGTGATGTGTGTCAAAAAAGTATGTTGGAATCGTGCCGAATATGCCTATTTGTTATCAACGAGCCCCAATGCattaatatatttaagaaaataaatgaCAAATCCGTATTAGAGATTATAAAAGAGTGTTCCTCAATACAGGTTTTAGAAGAAGATACGTTACCAAAATATATTTGTACAAAATGTGCAGAAGATCTGAACTATGTACACGAATTTCGTAACCTAATAATCAAATCAGATTTGAAACTGAAACAAAATGTTGAGAAACACCTGCATAAACCAGCCGAAGAAAGTGAACGTCATAATGAAAGTTGTGATGGGGATGaggaaaaatttgaaattaaagatGAATTAAACGAAGTATCAATACAAGGAATTGTGAAAGAAGAAGAGGTATCAGATGTTGACTTCGAGCTTACTGTTACAGCTGAACGTCTCACATTAACAAAGGAATCTAAgaagaaaaacttgaaaactgtGAGCAATTTCCTGAAAAGTACAAAGGACGTGGAACTGACGAAGCGAAAAAAGAAAAGACAAGTGTTTCATTGCTGCGAGTGTGATGAAACATTTAAATCTGCATATAGTTTTAAAAGTCATAACATTTTGCATACTGGTGTGCAGCCGTTTTCCTGTGAAACTTGTAATAAAGGGTTTCCCACAAAGTGGGCATTTATGATACATACCAGGGTCCATACAGGCGATAAACCATTTGCTTGTGATGTGTGTGAAAAAAAATTTGGATATCGCAATGGTAGCAGAACTAGTTATGTTTGTATTACGACTTGCGTACACAAAAATgGGAAGCAACTACCTTGTCCTACGTGTGGAAAAACTTTCAGAGACCAAACATGCCTCCAGGCACATATAAAGAGACATAGCGGATTGAAGCCTTTTAGCTGTGAAATATGCAGCCAAAAATTTACATTGCAAACCAGTCTTACTAGACACATGTTGCTTCACTCTGGCATCAAACCATATGAATGTAAAGTATGTGAAAAGACCTTTTCTCAGAGCAGCATATTATATCGACACATGAGGGTCCATTCAGGAGAGAGGCCGTTCTCTTGTAGTTTGTGCCAGAAAGAATTTGCTTACAAGCATCACTTACAGGGACATATGAAAAGCCACCATAAAAATGATGAGTTAACAGAATCTTCTGGTAACCAAGAGGACAGTAGTAATGTCCCAGAAATATTACCTGAAGAGCCAGTTTAG
- Protein Sequence
- MLELCRICLSDINEPQCVNIFVKINNKSVLEMIKECSSIQVLEKDILPKYICTKCAEKLNCLYEFRDLIIKSDLKLKKNLEAKKNLCKNQNKSIEEGEHYHRNENWDGDEGEFIIKDELNEFSIEDNLKEEISDIDLEVTESSDAVTISEESATKIEKTRRKALRATKDEKLIMKRKKKRRVLECQECNETFKSIYSFTSHNIMHTGVQPFSCLFCNKGFPTKWALTLHTRVHTGEKPLTCDVCQKKYGSPSGLILHKRTHNGVKKFQCNVCKKAFYQSCQLEVHMRRHTGEKPYMCEICSKTFGDKSNLIRHGERHQQGKELPCPTCGKTFKRQTCLQAHIKRHSGLKPFSCDECNQKFTKQTSLNRHKLLHTGIRPYKCKVLEGDILPKHICTKCVQDLNQAHGFRNLIIKSDLKLKKSFEAKKELYRDQNNSAEINEHCHICDEDEEKFEFKFNELSAEGVKEDEVSVKIAASVETLILPDKLPIETTNQPEKLATQPEKLRNEPENLTTEDEKNNTEILSKPLKVTKDEKLIEQKRKKALLKCKQCNETFRSGYSLRRHNILHTGVLPYSCEFCNKGFPSRWGLTIHTRVHTGDKPLECDVCQKSMLESCRICLFVINEPQCINIFKKINDKSVLEIIKECSSIQVLEEDTLPKYICTKCAEDLNYVHEFRNLIIKSDLKLKQNVEKHLHKPAEESERHNESCDGDEEKFEIKDELNEVSIQGIVKEEEVSDVDFELTVTAERLTLTKESKKKNLKTVSNFLKSTKDVELTKRKKKRQVFHCCECDETFKSAYSFKSHNILHTGVQPFSCETCNKGFPTKWAFMIHTRVHTGDKPFACDVCEKKFGYRNGSRTSYVCITTCVHKNGKQLPCPTCGKTFRDQTCLQAHIKRHSGLKPFSCEICSQKFTLQTSLTRHMLLHSGIKPYECKVCEKTFSQSSILYRHMRVHSGERPFSCSLCQKEFAYKHHLQGHMKSHHKNDELTESSGNQEDSSNVPEILPEEPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -