Lqua066163.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptura quadrifasciata
Gene Symbol
-
Assembly
GCA_963675555.1
Location
OY776680.1:80557737-80589263[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.0056 1 12.0 4.5 1 23 84 106 84 106 0.99
2 29 0.04 7.5 9.3 5.5 1 23 110 132 110 132 0.97
3 29 0.00023 0.043 16.4 3.1 1 23 141 163 141 163 0.98
4 29 0.54 99 5.8 2.3 1 20 172 191 172 194 0.94
5 29 0.0012 0.23 14.1 5.1 1 23 203 225 203 225 0.99
6 29 0.0026 0.48 13.1 0.9 1 23 234 256 234 256 0.98
7 29 0.0017 0.31 13.7 4.0 1 23 265 287 265 287 0.98
8 29 0.022 4 10.2 0.4 1 23 296 318 296 318 0.98
9 29 0.0034 0.63 12.7 2.5 1 23 327 349 327 349 0.98
10 29 0.0061 1.1 11.9 0.8 1 23 358 380 358 380 0.98
11 29 0.0038 0.71 12.6 4.0 1 23 389 411 389 411 0.99
12 29 0.18 33 7.3 5.0 1 23 420 442 420 442 0.99
13 29 8.2e-05 0.015 17.8 0.9 1 23 451 473 451 473 0.99
14 29 0.032 5.9 9.6 2.9 1 23 482 504 482 504 0.98
15 29 0.00015 0.028 17.0 2.2 1 23 513 535 513 535 0.99
16 29 0.002 0.37 13.4 9.2 1 23 791 813 791 813 0.99
17 29 0.0043 0.8 12.4 2.6 1 23 817 839 817 839 0.98
18 29 0.00046 0.085 15.4 6.1 1 23 848 870 848 870 0.99
19 29 0.025 4.7 10.0 3.7 1 23 879 901 879 901 0.98
20 29 5.9e-05 0.011 18.3 1.0 1 23 910 932 910 932 0.99
21 29 0.006 1.1 11.9 1.7 1 23 941 963 941 963 0.98
22 29 0.044 8.2 9.2 4.2 1 23 972 994 972 994 0.98
23 29 0.00028 0.053 16.1 3.8 1 23 1034 1056 1034 1056 0.99
24 29 0.048 8.8 9.1 3.6 1 23 1065 1087 1065 1087 0.98
25 29 0.013 2.4 10.9 5.2 1 23 1096 1118 1096 1118 0.99
26 29 0.0079 1.5 11.6 3.6 1 23 1127 1149 1127 1149 0.98
27 29 0.00018 0.033 16.7 4.3 1 23 1158 1180 1158 1180 0.99
28 29 0.0034 0.64 12.7 1.6 1 23 1189 1211 1189 1211 0.98
29 29 0.00098 0.18 14.4 5.3 1 23 1220 1242 1220 1242 0.98

Sequence Information

Coding Sequence
ATGTTAAATTTTGAAGGTGATTCCTGCCACGTCACTGAATTAAAGCAAGGAATTGATTGCCTTCATGAAGAATTGATCATAAAAGATGAAGATGAAACCACGGATGAAACAGAAGTGGCTAGCTTAGGACCATCGATGCAAACAGAAGATATTGACATTGAACCAGAGCAAAACGATTTTGCCAGTTTTCAAGAATGGTCTACTGTAGTCAAAATGGACCACTACAAAAATATTTCAGGCATAACGGTGTACAAGTGTCAGATATGTACATATAAGACGACTTATAAAGATCATCTGGACAGTCACATATTTACACACAACAATTTGTTCAAATGTGAAATGTGCTCATTTGAGACAAAACATAAGAAGAATCTTAGTAGACACAAATTGAACCATCAAGATCCCTCAGATATAACATTGTTCAAGTGTGAATTATGTACATTTGAGACAAAACGTAAGGATAATCTTAGGAATCACATGTTTACGCATAAAGATCCCTCAAGGGTAACAATGTATAAGTGTAATATTTGCACATATGAGACAAAAGTGAAGCCTTGTCTTAGTAGACACAAATGGATTCATCAAGACCCCTCAGATATAACAATGTTCAAGTGTGAATTGTGTACGTTTAAAACAAAACATAAGAGCAGTCTTAGGCAACACATATTAACGCATAAAGATCCGTCAGAGGTAACAATATATAAGTGTGAAATCTGCACATATGAGACCAAAGAGAATCGTGAACTTAATCGACACAAATTGATTCATCGAGACCCCTCGGACCTAACATTGTTCAAGTGTGAATTGTGTACGTTTAAGACAAAGCACAAGGGTAATCTTAAAAAACACATAGTGATGCATAAAGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGCACATATGAGGCCAAAGCGAATCGTGATCTTAATCGACACAAATTGATTCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGCATTGTGTACGTTCGAGACAAAACATAAGAGCAGTCTTAGGGCACACGTGTTGACGCATAAAGATCCGTCAGAGCTAACAATGTATAAGTGTGATATTTGCACATATGAGACCAAAGCGAACCGTGAACTTAATCGACACAAATTGATTCATCAAGACCCTTCAGACATAGCATTGTTTAAGTGTGAATTGTGTACATTTGAGACAAAACATAAGAGGAATCTTAGGGGTCACATGTTGACGCATAGAAATCCCTCAGAGGTAACAATGTATAAGTGTGATGTTTGTACATATGAGGCTAAAATGAAGCATCATCTTAGTAACCACAAATTGACCCATCAAGACCCTTCAGACATAACATTGTTCAAGTGTGAATTGTGTACGTATGAGACAATACAAAAGGGGAATCTTAGGAAGCACATATTGACGCATCAAGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGCACATATGAGACAAAAGTAAAGCATTATCTTAGTAACCACAAATTGATTCATCGAGACCCCTTAAACATTACATGGTTCAAGTGTGAATTGTGTACACTTAAGACAAAATATAAGGGGAATCTTAAAAACCACATGTTGACGCATAAGAATCCCTCAGAGGATTTGGATCTACCTAAGAATTCTGTGACATGTATTGAATGTAGGAATAACCTTCAAATATTCTTTCGTTTAAGATCAGCCTGTATTGATATGAGCGAAAGAGCAGTATCCTTAATCAATTTGAAAAACGGTGTTGGTTTGGATCCAATAAAGATTGAAAATACGGATAATCTAAAACCAGCTACAGAGGTCAAAGATGGGATAAGATGCAATTTTTGCACAAAGTCCGCTGGGCAAGAATGTCTTGTATCATTGCATGAATCAAAGGAAAATGTATTGGTGGtggatattttaaacaaatacatTCCAGAATtgaatcCAAACAATATTGGAGAATTATTAACCTGCAAAACCTGCCTTGATGaaatgcaaaatatttcaaattttttaataaaatgtttggatgtggaaaagaaaataaataaatatactgaaatgGAAGGAACGGATGATAAAGGGCAGATAAAATTGCAGGATGTTCAACAATTTATATTCGAGCCAATGTTAAAATTTGAAGGTGATTCCTGCCACTTAAACGAATTAAAGCAAAGATATGATTACATTCACGAAGAATTGATTATAAAAGGTGAGAATGAAACCACGTTTGAAACAGAAGTGGAAAGCCTAGGACCATCGGTCAAAATAGAAGATATTGACATAGAACCAGAACAAAGCGATTGTGACAGttttcaagAAGGGTCTACCGAAGTCAAAACGGaccattacaaaaatattttaggcaTAATGGTGTACAAGTGTCATATATGCACATATAAGACGACTCATAAAGATCATCTGAACAATCACATATTTACGCATAACAATGTTTTCAAATGTGAAATGTGCTCATTTGAGACGAAACAGAAGAGAAATCTTAGTAGACACAAATTGATTCATCAAGACCTCTCAGACATAACATTGTTCAAATGTGAATTGTGTACTTTTAAGACAAAACATAAGAGTAGTCTTAGAAAACACATGTTAACGCATAAAGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGTACATATGAGGCCAAAATGAAGCATCATCTTATTAGACACAAATTGATTCATCAAGACTCATCAGACAGTACATGGTTCAAGTGTGAATTGTGTACGCTTGAGACAAAACAGAAGGCGGATCTTAGAAGACACATGTTGACGCATAAAGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGCACATATAAGACCAAAGCGAATCGTAGTCTTAATCGACACAAATTGATTCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGAATTGTGTATGTTTGAGACAAGACATAAAAAGAATCTTAGTAATCACATGCTGACACATAAGGATCCCTCAGAGGTAACAATGAATAAGTGTGATAGTTGCACGTATGAGACACAAGTGAAGCATTGTCTTAGTAGACACAAATTGATTCATCAAGACCCCTCAGACATAACATTGTTCAAGTGTGAATTGTGTACATTTGAGACAAAACATAATGGAAATCTTAAGAAACATATGCTAACGCATAAGGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGTACATATGAGGCTAAAATGAAGCATCATCTTATTGCACATAAATTGAAACATCAAGACCCCTCGGACATTACATGGTTCAAGTGTGAATTGTGTACTTTTAAGACAAAACATAAGGGGAGTCTAAAGCAACACACGTTGACGCATAAAGATTCGTCGGAGGCAACTTTGTATAAGTGTCATATTTGCACATATGAGACCAAGGTGAGTCGTTATCTTAATCGACACAAATTGATTCATCAAGACCCCTCAGACATAGCATTGTTCAAATGTAAATTGTGTACCCTTGAGACAAAACATAAGGGTAATCTTAGAAAGCACATGTTGACGCATAGAGATCCGTCAGAGGTAACAATGTATAAGTGTGATATTTGCACGTATGCGACAAAAGTGAAGCCACATCTTAGTAGACACAAATTGATTCATCAAAACCCCTCAGACATAACATTGTTCAAGTGTGAATTGTGTACTTTTGAGACAAAACACAAGGAGAATCTTAAGAGACACATGTTTACGCATAAAAATCCCTCAGAGGTAAcaatgtataaataa
Protein Sequence
MLNFEGDSCHVTELKQGIDCLHEELIIKDEDETTDETEVASLGPSMQTEDIDIEPEQNDFASFQEWSTVVKMDHYKNISGITVYKCQICTYKTTYKDHLDSHIFTHNNLFKCEMCSFETKHKKNLSRHKLNHQDPSDITLFKCELCTFETKRKDNLRNHMFTHKDPSRVTMYKCNICTYETKVKPCLSRHKWIHQDPSDITMFKCELCTFKTKHKSSLRQHILTHKDPSEVTIYKCEICTYETKENRELNRHKLIHRDPSDLTLFKCELCTFKTKHKGNLKKHIVMHKDPSEVTMYKCDICTYEAKANRDLNRHKLIHQDPSDITLFKCALCTFETKHKSSLRAHVLTHKDPSELTMYKCDICTYETKANRELNRHKLIHQDPSDIALFKCELCTFETKHKRNLRGHMLTHRNPSEVTMYKCDVCTYEAKMKHHLSNHKLTHQDPSDITLFKCELCTYETIQKGNLRKHILTHQDPSEVTMYKCDICTYETKVKHYLSNHKLIHRDPLNITWFKCELCTLKTKYKGNLKNHMLTHKNPSEDLDLPKNSVTCIECRNNLQIFFRLRSACIDMSERAVSLINLKNGVGLDPIKIENTDNLKPATEVKDGIRCNFCTKSAGQECLVSLHESKENVLVVDILNKYIPELNPNNIGELLTCKTCLDEMQNISNFLIKCLDVEKKINKYTEMEGTDDKGQIKLQDVQQFIFEPMLKFEGDSCHLNELKQRYDYIHEELIIKGENETTFETEVESLGPSVKIEDIDIEPEQSDCDSFQEGSTEVKTDHYKNILGIMVYKCHICTYKTTHKDHLNNHIFTHNNVFKCEMCSFETKQKRNLSRHKLIHQDLSDITLFKCELCTFKTKHKSSLRKHMLTHKDPSEVTMYKCDICTYEAKMKHHLIRHKLIHQDSSDSTWFKCELCTLETKQKADLRRHMLTHKDPSEVTMYKCDICTYKTKANRSLNRHKLIHQDPSDITLFKCELCMFETRHKKNLSNHMLTHKDPSEVTMNKCDSCTYETQVKHCLSRHKLIHQDPSDITLFKCELCTFETKHNGNLKKHMLTHKDPSEVTMYKCDICTYEAKMKHHLIAHKLKHQDPSDITWFKCELCTFKTKHKGSLKQHTLTHKDSSEATLYKCHICTYETKVSRYLNRHKLIHQDPSDIALFKCKLCTLETKHKGNLRKHMLTHRDPSEVTMYKCDICTYATKVKPHLSRHKLIHQNPSDITLFKCELCTFETKHKENLKRHMFTHKNPSEVTMYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-