Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776673.1:65214816-65231560[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.015 2.7 10.7 0.3 2 23 53 74 52 74 0.92

2 25 0.69 1.3e+02 5.4 3.4 1 23 80 102 80 102 0.97

3 25 0.05 9.3 9.0 1.1 1 12 108 119 108 130 0.77

4 25 0.00057 0.11 15.1 3.0 1 23 136 159 136 159 0.97

5 25 0.0005 0.093 15.3 1.8 1 23 171 194 171 195 0.96

6 25 0.088 16 8.3 1.0 3 23 205 225 203 225 0.96

7 25 0.00017 0.031 16.8 0.2 1 23 231 253 231 253 0.98

8 25 1.7e-05 0.0031 20.0 4.8 1 23 259 281 259 281 0.99

9 25 0.00066 0.12 15.0 0.1 3 21 289 307 288 308 0.95

10 25 0.044 8.2 9.2 0.3 2 23 345 366 344 366 0.91

11 25 0.0023 0.43 13.2 1.6 1 23 372 394 372 394 0.98

12 25 0.0015 0.28 13.8 0.4 1 23 400 422 400 422 0.95

13 25 0.0023 0.42 13.3 3.7 1 23 428 451 428 451 0.98

14 25 0.0003 0.057 16.0 1.4 1 23 463 486 463 486 0.95

15 25 0.027 5.1 9.9 2.8 3 23 495 515 494 515 0.98

16 25 0.01 1.9 11.2 6.1 1 23 521 543 521 543 0.98

17 25 0.017 3.1 10.5 0.4 1 13 549 561 549 565 0.90

18 25 0.23 43 6.9 0.4 2 23 621 642 620 642 0.94

19 25 0.0081 1.5 11.5 2.8 1 23 677 699 677 699 0.89

20 25 4.4e-05 0.0081 18.7 5.3 1 23 705 728 705 728 0.98

21 25 0.016 2.9 10.6 2.4 1 23 740 763 740 763 0.93

22 25 0.97 1.8e+02 5.0 3.9 3 23 776 796 775 796 0.98

23 25 3.7e-05 0.0068 18.9 4.0 1 23 802 824 802 824 0.97

24 25 0.00021 0.038 16.5 0.3 1 23 830 852 830 852 0.98

25 25 4e-06 0.00074 21.9 0.1 1 22 858 879 858 879 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.015	2.7	10.7	0.3	2	23	53	74	52	74	0.92
2	25	0.69	1.3e+02	5.4	3.4	1	23	80	102	80	102	0.97
3	25	0.05	9.3	9.0	1.1	1	12	108	119	108	130	0.77
4	25	0.00057	0.11	15.1	3.0	1	23	136	159	136	159	0.97
5	25	0.0005	0.093	15.3	1.8	1	23	171	194	171	195	0.96
6	25	0.088	16	8.3	1.0	3	23	205	225	203	225	0.96
7	25	0.00017	0.031	16.8	0.2	1	23	231	253	231	253	0.98
8	25	1.7e-05	0.0031	20.0	4.8	1	23	259	281	259	281	0.99
9	25	0.00066	0.12	15.0	0.1	3	21	289	307	288	308	0.95
10	25	0.044	8.2	9.2	0.3	2	23	345	366	344	366	0.91
11	25	0.0023	0.43	13.2	1.6	1	23	372	394	372	394	0.98
12	25	0.0015	0.28	13.8	0.4	1	23	400	422	400	422	0.95
13	25	0.0023	0.42	13.3	3.7	1	23	428	451	428	451	0.98
14	25	0.0003	0.057	16.0	1.4	1	23	463	486	463	486	0.95
15	25	0.027	5.1	9.9	2.8	3	23	495	515	494	515	0.98
16	25	0.01	1.9	11.2	6.1	1	23	521	543	521	543	0.98
17	25	0.017	3.1	10.5	0.4	1	13	549	561	549	565	0.90
18	25	0.23	43	6.9	0.4	2	23	621	642	620	642	0.94
19	25	0.0081	1.5	11.5	2.8	1	23	677	699	677	699	0.89
20	25	4.4e-05	0.0081	18.7	5.3	1	23	705	728	705	728	0.98
21	25	0.016	2.9	10.6	2.4	1	23	740	763	740	763	0.93
22	25	0.97	1.8e+02	5.0	3.9	3	23	776	796	775	796	0.98
23	25	3.7e-05	0.0068	18.9	4.0	1	23	802	824	802	824	0.97
24	25	0.00021	0.038	16.5	0.3	1	23	830	852	830	852	0.98
25	25	4e-06	0.00074	21.9	0.1	1	22	858	879	858	879	0.97

Sequence Information

Coding Sequence: ATGTATACCACTGAGGAACGGACGTTGAATACTAGATCAAAGAATGGAAAGCGCCAAGgttcttataaaaattataacgCCCCACGGAAGCGAAAAACAAGTAGGAAAATGGAAAAGGCCGTTAATTCTGCACCAGTGAAATTAGAAGAACCTATTAAATGCAGTGTTTGCAATACAAGTTTTTACACGAACATCGATTACGCAACACATTCCATAGAGCATAGCCTAGATAAGAGATATTCCTGTCATTTGTGCAGTTATAAGAACACGTCCAAGTATCGCTTAGAATCCCACGTACGAGCGCATGAGGGCTCCGCCAAATACAAATGCGAAGTATGTGGAAAAGCTTTTAGAATAGGCACGCATGCCATTGAGCACAAATATTTTCATACGGGAGAAAGACCATTTCAGTGCGAAATTTGCGGAAAACACTTCATGTACTCTAGACGTTTGGCTTCTCATCGTCGTAACTCGCATTATCAACTTTTGACTGGCAAACCTAAGATAAAATATGAGTGCGAGTTGTGCGATAAAAAATTTGAATCCTTGCCGGGCCtaaataatcataaaaataagaagCATCATAATATCCAAACGGACATGTCCGTCATATGTGAAATCTGTGGCAAAAAAATCTCGTGTAAAGGTAGACTGAAATACCACCTAAGAATTCATAGTGGCGACAAACCATTTTCATGCATGGTATGTGCTAAAAAATTTGCCATGAAAGACTTATTAATAGAACATATGAGGGTGCATACAGGAGAGAAACCGTATACTTGTAAATATTGTGGTAAAACTTTTGGTCACAGGTCACCATTTAGGTATCATATTAAAACACACACCGGCGAAAAACCAAACATTTGTACAATATGTGGTAAAGGTTTTATTTCCAGGGCCGGTATGAATAGTCACATGAAAAGCTGTTATAAGACGAAAGCAAGCgaaaggaaaaagaaaataagaagaTTCCGGAAAAGTGCAAGACCCAAAAAACATATTGTGGAACATGTGGAATTGGAAGAACCGATTCAGTGTGAATTTTGTAGTAAATCATACAATACTAACGTTTCTTATGCATTACATTCGATTGAGCATAACAAAGAAGGTCGATATTCATGTCATTTTTGTGATTATTTAGTTAAGTCAAAGTACACGTTGGAAGCACACGTCAGGGCGCATGAAGGCTCTATGAAATACAAATGCGAAATTTGTGGTAAAGCATTTAAAGTAGGAACACATGCTGCAGAACATAAAAATGTTCATACAGGAGAAACGCCTTTTCAATGTGAAGTGTGCGGCAAGCATTTTTTGACCTCCAGACACTTAGGGTCTCATAGACGCATATCACATTACCCCAAGATCACTGGAAATCCTCCTATAAAGTATGAATGCTCTATATGCAACATTTCGTACAAGTATCTATCGAGTTTAAGTAGACATAAGCTAAATAAACACAAGAAAATGGATATGTCGGTTCTCTGTGATATTTGCGGAAAAAGACTTTCTTGTAAAGATAAATTGAAATATCATATAAGAAACCACACTGGTCTAGATACATATCCTTGTCttatatgtaaaaaaaagtgCTCCAAAAAAGAACAACTCAGATGCCATATGCGCATACATACTGGCGAAAAACCATTTACCTGCAAGTACTGTGGAAAAGGATTCGCACAAAACGCTCCTTATATGGATGAAGATCCAACATGGGAACCTAGAGTTACTAAAAGGAGGTCTCCGAGGAAGTATAATTTTAACACAAATTTAAAGTCGATCAAGGACTTGCAAATATCCAGACCAAAATTGCACAAATCGAATAAAATAGACTTCGATCCAGTCAAACTAGAAGAGGCCTTAAATTGCAGTATTTGCAGTAATTCGTACAAAACCAATATAGACTTTGCTTTGCATTCAATTAAACATagtaaagataaaaaatattcttgTCATTTTTGTGACTATAGAACAATTTGCAAATATCGCACAGAGGCTCATGTAAGAAACCATGAGGGTACCTCAAGAAAATACAAATGCGAAATGTGTACCAAGACTTTTAGAAAAAGCAGTTATGCAGCCGAACATAAATATTTCCACACAGGAGAAAAACCATTTCAGTGTGAAATTTGTGGAAAACATTTCATGTACTCTAAAAGTTTGGCACATCATCGTCGCACGACACATTATGAAGTCATAACAGGCaaacctttaaaaaaatatgattgcAAAATTTGCAACAAACACTACGAATCTCAATCTGGTATACTCAGGCATAATTCCAGATATCACAAAGATCCTACTGCCGGAGGTGGATTGGCAGTGCTTTGCGACATATGCGGTAAAAGGCTGtcttgtaaatataaattaaaattccatttgagaACCCATACTGGCTATAAACCGTTCTGTTGTAATTTTTGTTCAAAAACTTTTACAAATAAGGATCAGTTGGCATCACACGAACGTGTGCACACTGGTGAAAAACCGTTCACTTGCGAATTTTGTGGAAAAGCGTTTGCCCAATCTGCCCCTTACAGATACCACGTAAAAATCCATACAGGTGAGCGAAAATACGTGTGCCCGCTTTGTAATAAAGCATTTATCTCTAAAAGTAATATGAGAATACATATAAAAACCTGTAACATAGTCGTCAAAAAAGAGTag
Protein Sequence: MYTTEERTLNTRSKNGKRQGSYKNYNAPRKRKTSRKMEKAVNSAPVKLEEPIKCSVCNTSFYTNIDYATHSIEHSLDKRYSCHLCSYKNTSKYRLESHVRAHEGSAKYKCEVCGKAFRIGTHAIEHKYFHTGERPFQCEICGKHFMYSRRLASHRRNSHYQLLTGKPKIKYECELCDKKFESLPGLNNHKNKKHHNIQTDMSVICEICGKKISCKGRLKYHLRIHSGDKPFSCMVCAKKFAMKDLLIEHMRVHTGEKPYTCKYCGKTFGHRSPFRYHIKTHTGEKPNICTICGKGFISRAGMNSHMKSCYKTKASERKKKIRRFRKSARPKKHIVEHVELEEPIQCEFCSKSYNTNVSYALHSIEHNKEGRYSCHFCDYLVKSKYTLEAHVRAHEGSMKYKCEICGKAFKVGTHAAEHKNVHTGETPFQCEVCGKHFLTSRHLGSHRRISHYPKITGNPPIKYECSICNISYKYLSSLSRHKLNKHKKMDMSVLCDICGKRLSCKDKLKYHIRNHTGLDTYPCLICKKKCSKKEQLRCHMRIHTGEKPFTCKYCGKGFAQNAPYMDEDPTWEPRVTKRRSPRKYNFNTNLKSIKDLQISRPKLHKSNKIDFDPVKLEEALNCSICSNSYKTNIDFALHSIKHSKDKKYSCHFCDYRTICKYRTEAHVRNHEGTSRKYKCEMCTKTFRKSSYAAEHKYFHTGEKPFQCEICGKHFMYSKSLAHHRRTTHYEVITGKPLKKYDCKICNKHYESQSGILRHNSRYHKDPTAGGGLAVLCDICGKRLSCKYKLKFHLRTHTGYKPFCCNFCSKTFTNKDQLASHERVHTGEKPFTCEFCGKAFAQSAPYRYHVKIHTGERKYVCPLCNKAFISKSNMRIHIKTCNIVVKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -