Lqua003078.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776673.1:65579012-65596436[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.1 19 8.1 3.7 6 23 2 20 1 20 0.92 2 17 0.58 1.1e+02 5.7 3.1 2 23 27 49 24 49 0.90 3 17 0.0027 0.49 13.0 4.1 1 23 55 78 55 78 0.95 4 17 8.1e-05 0.015 17.8 3.5 1 23 83 105 83 105 0.98 5 17 0.011 2 11.1 1.4 1 23 114 135 114 135 0.98 6 17 2e-06 0.00036 22.9 0.8 3 23 145 165 143 165 0.97 7 17 7.6e-06 0.0014 21.1 0.5 1 23 171 193 171 193 0.99 8 17 1.1e-06 0.00021 23.7 0.3 1 23 199 221 199 221 0.98 9 17 0.00031 0.057 16.0 3.7 1 23 282 304 282 304 0.98 10 17 0.00059 0.11 15.1 0.2 1 23 319 342 319 342 0.95 11 17 0.0006 0.11 15.1 1.9 1 19 348 366 348 371 0.91 12 17 0.00045 0.083 15.5 2.6 2 23 377 399 377 399 0.92 13 17 5.5e-05 0.01 18.4 0.6 3 23 408 428 406 428 0.97 14 17 1.3e-05 0.0023 20.4 0.1 3 23 437 458 435 458 0.96 15 17 7.8e-05 0.014 17.9 0.6 1 23 464 486 464 486 0.96 16 17 1.7e-06 0.00032 23.1 1.1 2 23 492 514 491 514 0.96 17 17 0.00045 0.084 15.5 1.5 1 21 520 540 520 541 0.94
Sequence Information
- Coding Sequence
- ATGTGCAATAAGAGATTTCATCAAAAGTATAATTTAGAATACCACAAGAAGTTCAAGCACTTTAGAGAATTTTCCTGTAAATGCGATTATTGTGATCAAATATGCCTAAATAAACAAGGTCTCAAACTCCATATTGACAACgtgcatttaaataaatacaagtttTGCTGTGATAAGTGCAAAAAGGGTTATAATTCTAAAGGCGAACTCGACAAGCATTACAGATTTGATCATGAAGGAGTTCGATATTCTTGTGAATTTTGCGAAAAAGTTTTCAAAGATAAGAATCACTTTAAGATACATGTCAGTAGCCACGATCCAAGTTATAATAAGCCAGAATTCACTTGTTCAATTTGTACAAAAGTTTTGTCACTAAAATCTTACGATCGACACATGAAAATGCATAACGGAGAGAACGATTCGAATATTATTTGCGACATTTGTGGTATGGTGGTTTCAAGCAAGAGTCATTTAACCAATCACAGAAGAACCCACACAGGAGAGAAGCCATACGAGTGCGATTTTTGCGAAAAGCGCTTTGCCAGAAACGAAACTCTTGCCGATCATAGACGAGTGCATACGAAAGAGAGACCTTACGTTTGCAGCGTCTGTAGCAAAGCTTTTACACAGAAATCTGCTTTAAACGTACATTCAAGAATTCACACAGGACGTACGGTAAGCTTTGCTGCCACTCCCGCAAAACACACCGCAGGGCCAGCTACGTCTACGCGAGGTTGGACTGAGGTCGTGCTTGTTGTCAGCAGCAAAAATCGCATGGTGCATGGTACAGGGATATGGGATAGAAAAAATGTCATTGAATGTACAAGCGATATTACAAAGTACTACCATTGCGACCATTGTGGTAAAGTATATTTATCTTGGGCTCAGTTAAAAAATCATTTTCGAAGTCACGAAAACCAAAACAAACGTCTACAAGCCAAGGAGCTGGCAGTCTACAAATGCGATGTTTGTGAGAAAGTTTTTGGAGAAATGGGAGCCCTAAATAGACACAAGCAAGAAACTCACTTAAAAGTACCCAGATTTACTTGTGCGAAATGCAATAagactttttattataaatatctactCGTTCGTCATGATAAAGTGGAACATGAAGGAATTCAACCCACGTGTGAAATATGTAATATGGTTTTCACTAGATATACCACACTAAAGAAACACCATGAAGAGAAACATAATCCAGAGTATAGAAAGATGATTTGTCCAGTTTGTTTTAAAACATTTGGAGGCTCTAGTAGTTATAGAAAACATATAAAGAGACATGACGGACTACCACAAACAAGCATTTGTGAGGTTTGTGGGAAAGCCTTGTCTTCAGCCTCAAGTCTTAAGGACCACATGATGAGAAGACACAGCGAGGAAAAACCTTTCGCATGCGATGCATGTGACAAAGCTTTTACCACCTCGCAATCATTGAGGACGCATAAAGTCACACATGACGAAACTATTATAGAATGTCCAATATGTAAGAAGAGATTTACGCAGCATGCTTCTTTGAAAATACACATCAAAAGGGTTCATATAGGTGAAAGACCCTACCCATGTTCTACATGTCAAAAATACTTTGCAACTCGAACGGAATTGAAAAAACACTCTAAGAGATGCCGCGGGCCAAGAAAATAA
- Protein Sequence
- MCNKRFHQKYNLEYHKKFKHFREFSCKCDYCDQICLNKQGLKLHIDNVHLNKYKFCCDKCKKGYNSKGELDKHYRFDHEGVRYSCEFCEKVFKDKNHFKIHVSSHDPSYNKPEFTCSICTKVLSLKSYDRHMKMHNGENDSNIICDICGMVVSSKSHLTNHRRTHTGEKPYECDFCEKRFARNETLADHRRVHTKERPYVCSVCSKAFTQKSALNVHSRIHTGRTVSFAATPAKHTAGPATSTRGWTEVVLVVSSKNRMVHGTGIWDRKNVIECTSDITKYYHCDHCGKVYLSWAQLKNHFRSHENQNKRLQAKELAVYKCDVCEKVFGEMGALNRHKQETHLKVPRFTCAKCNKTFYYKYLLVRHDKVEHEGIQPTCEICNMVFTRYTTLKKHHEEKHNPEYRKMICPVCFKTFGGSSSYRKHIKRHDGLPQTSICEVCGKALSSASSLKDHMMRRHSEEKPFACDACDKAFTTSQSLRTHKVTHDETIIECPICKKRFTQHASLKIHIKRVHIGERPYPCSTCQKYFATRTELKKHSKRCRGPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -