Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776673.1:21671051-21678022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.5 1.8e+03 1.9 0.2 1 10 52 61 52 69 0.82

2 14 5.2 9.7e+02 2.7 0.0 5 18 70 83 68 83 0.92

3 14 0.00055 0.1 15.2 0.4 2 21 103 122 102 123 0.92

4 14 0.0003 0.056 16.0 0.6 1 23 180 202 180 202 0.99

5 14 1.9e-05 0.0035 19.8 2.0 3 23 209 229 208 229 0.98

6 14 7.3e-06 0.0013 21.1 3.7 1 23 235 257 235 257 0.97

7 14 0.00022 0.042 16.4 1.7 1 23 266 288 266 288 0.96

8 14 6.6e-06 0.0012 21.3 0.2 2 23 295 316 294 316 0.95

9 14 4.8e-09 8.9e-07 31.1 1.4 1 23 322 344 322 344 0.99

10 14 1.4e-06 0.00026 23.4 2.8 1 23 350 372 350 372 0.98

11 14 3.6e-06 0.00067 22.1 0.8 1 23 378 400 378 400 0.97

12 14 1.9e-07 3.6e-05 26.1 0.4 1 23 406 428 406 428 0.98

13 14 5.3e-07 9.9e-05 24.7 0.1 3 23 436 456 435 456 0.98

14 14 2.5e-05 0.0047 19.4 0.2 1 22 462 483 462 485 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.5	1.8e+03	1.9	0.2	1	10	52	61	52	69	0.82
2	14	5.2	9.7e+02	2.7	0.0	5	18	70	83	68	83	0.92
3	14	0.00055	0.1	15.2	0.4	2	21	103	122	102	123	0.92
4	14	0.0003	0.056	16.0	0.6	1	23	180	202	180	202	0.99
5	14	1.9e-05	0.0035	19.8	2.0	3	23	209	229	208	229	0.98
6	14	7.3e-06	0.0013	21.1	3.7	1	23	235	257	235	257	0.97
7	14	0.00022	0.042	16.4	1.7	1	23	266	288	266	288	0.96
8	14	6.6e-06	0.0012	21.3	0.2	2	23	295	316	294	316	0.95
9	14	4.8e-09	8.9e-07	31.1	1.4	1	23	322	344	322	344	0.99
10	14	1.4e-06	0.00026	23.4	2.8	1	23	350	372	350	372	0.98
11	14	3.6e-06	0.00067	22.1	0.8	1	23	378	400	378	400	0.97
12	14	1.9e-07	3.6e-05	26.1	0.4	1	23	406	428	406	428	0.98
13	14	5.3e-07	9.9e-05	24.7	0.1	3	23	436	456	435	456	0.98
14	14	2.5e-05	0.0047	19.4	0.2	1	22	462	483	462	485	0.89

Sequence Information

Coding Sequence: ATGAATTTAAATTGTATTCCCGATTTTAACGTAATTTGTAGAGTTTGTTTAAAATACGAAGCAGAATTAAAATCATTATTTCTCTCTGAAGCAGCTAATATGTTGAACTACTGTCAGTTAATGGAGGTGTGTGAAAATGATGAACTGCCGACTCATATCTGCCTGGAATGTGACAAGTCTTTGCAGGAAATttatcaatttaaacaaaaatgtgaTATTTCTTATGAAACCTTAAAAAACCTAAAACGAGTAGGCGATGACCAAATAAATAAGGAAGAAAATGTAAAGAATGTGGGATCCTCTCTAATTTGTAAAAAGTGTAATGTAACATTTTCAAGTGAGCAACTTTTGCAGAAGCATTTATTAAAGGATGTTGATAGAGGATTCATAAATTGTACTAGACCAAATAAATTATTAGAGACAGAAGAAACGAATGACAACGATAAAATACATTATGAGGAAAATAAATATGTTCAAAATAATTCAGAGGATGAGCTGACCTCTTTCCTAGAAGTTCAATCTGCTGTTCCCTTGCCCTATACATGTAGCCAGTGCACTCAATCATTCACCGAAGAGAATGATCTGGGCTTGCATATGTCTACACATACGTCAGGTGAATTGTTATGTGTAGTATGTTATAAAACGTTTCGAACTAGACAGATGCTCAAAAGGCATATAAAGACACATATGATTAATAAACCACATATTTGCCAAAAATGTGGGAAGGGGTACGCAGAGTCACATTCTTTAACAAAGCACATGAGGACACATATGGGTATTCCAAGGGAGAAAAGGCACTTTTGTGAGCAATGCGGTCAAGgATTTTCAGAACCTTATTATTTGAAGGTTCACAACAGAAAACATACAGGTGAACGACCATTAATGTGTGACACCTGTGGAAAATCCTTTGCCGATCCTCGATCATTAAAAGCTCACAACATGATGCATTCTGGGGAAAAACCATATAAATGCCATATTTGTCCGAAAGCGTTCAGTCAAAGCGTCAACTTAACAAAACATATAAGGGTGCATACTGGAGAAAAACCATATGTCTGCCAACTTTGTGGTAAATGTTTCACTCAATCATCCAGTTTGGATAAGCACAACAGGATACACACTGGAGAAAAACCCTTTGCCTGTGACAATTGTCCTAAAAGATTTGCAGAAAAAGGAACATTAATTCATCACATAAGGACACACACTGGCGAAAAACCCTATGTATGTGAAGTTTGCGGCAAATCATTTGCTAGTTCATCTGAACTAAAATTGCACAATCGCAAACATTCaggtataaagaaaaatatttgcaaCATCTGCGGGAAAGACTTTGCAACTCCCAGCAATCTTTTAGTTCACACCCGATCTCACACCGGCGAGAAGCCATTTGAATGTGCAATTTGTGATAAAAAATTTGCAGATAAAGGAACGCTCAATAAACATGGAACGCTTGTACATAAGCTAAAGTAA
Protein Sequence: MNLNCIPDFNVICRVCLKYEAELKSLFLSEAANMLNYCQLMEVCENDELPTHICLECDKSLQEIYQFKQKCDISYETLKNLKRVGDDQINKEENVKNVGSSLICKKCNVTFSSEQLLQKHLLKDVDRGFINCTRPNKLLETEETNDNDKIHYEENKYVQNNSEDELTSFLEVQSAVPLPYTCSQCTQSFTEENDLGLHMSTHTSGELLCVVCYKTFRTRQMLKRHIKTHMINKPHICQKCGKGYAESHSLTKHMRTHMGIPREKRHFCEQCGQGFSEPYYLKVHNRKHTGERPLMCDTCGKSFADPRSLKAHNMMHSGEKPYKCHICPKAFSQSVNLTKHIRVHTGEKPYVCQLCGKCFTQSSSLDKHNRIHTGEKPFACDNCPKRFAEKGTLIHHIRTHTGEKPYVCEVCGKSFASSSELKLHNRKHSGIKKNICNICGKDFATPSNLLVHTRSHTGEKPFECAICDKKFADKGTLNKHGTLVHKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370056;
90% Identity: -
80% Identity: -