Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776679.1:71975962-71991849[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00013 0.024 17.2 2.4 1 23 309 331 309 331 0.97

2 18 0.00011 0.02 17.4 1.8 1 20 337 356 337 359 0.94

3 18 2.3e-05 0.0042 19.5 0.8 1 23 365 387 365 387 0.98

4 18 0.0003 0.056 16.0 3.6 3 21 395 413 393 415 0.94

5 18 4e-05 0.0074 18.8 4.6 1 23 421 443 421 443 0.99

6 18 3.8e-05 0.007 18.9 5.3 1 23 449 471 449 471 0.97

7 18 1.4e-05 0.0026 20.2 8.2 1 23 477 499 477 499 0.97

8 18 1.5e-07 2.7e-05 26.4 2.7 1 23 505 527 505 527 0.98

9 18 0.00011 0.02 17.4 6.7 1 23 533 555 533 555 0.97

10 18 1.8e-05 0.0034 19.9 4.9 1 23 561 583 561 583 0.98

11 18 2.4e-06 0.00045 22.6 3.0 1 23 589 611 589 611 0.98

12 18 5e-05 0.0094 18.5 8.0 1 23 617 639 617 639 0.98

13 18 4.2e-05 0.0078 18.7 9.1 1 23 645 667 645 667 0.98

14 18 2.5e-05 0.0047 19.4 7.7 1 23 673 695 673 695 0.98

15 18 2.4e-05 0.0044 19.5 7.0 1 23 701 723 701 723 0.97

16 18 9.4e-05 0.017 17.6 0.4 1 23 729 751 729 751 0.97

17 18 0.13 25 7.7 5.0 1 23 761 783 761 783 0.98

18 18 2.8e-07 5.3e-05 25.5 0.9 1 23 789 811 789 811 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00013	0.024	17.2	2.4	1	23	309	331	309	331	0.97
2	18	0.00011	0.02	17.4	1.8	1	20	337	356	337	359	0.94
3	18	2.3e-05	0.0042	19.5	0.8	1	23	365	387	365	387	0.98
4	18	0.0003	0.056	16.0	3.6	3	21	395	413	393	415	0.94
5	18	4e-05	0.0074	18.8	4.6	1	23	421	443	421	443	0.99
6	18	3.8e-05	0.007	18.9	5.3	1	23	449	471	449	471	0.97
7	18	1.4e-05	0.0026	20.2	8.2	1	23	477	499	477	499	0.97
8	18	1.5e-07	2.7e-05	26.4	2.7	1	23	505	527	505	527	0.98
9	18	0.00011	0.02	17.4	6.7	1	23	533	555	533	555	0.97
10	18	1.8e-05	0.0034	19.9	4.9	1	23	561	583	561	583	0.98
11	18	2.4e-06	0.00045	22.6	3.0	1	23	589	611	589	611	0.98
12	18	5e-05	0.0094	18.5	8.0	1	23	617	639	617	639	0.98
13	18	4.2e-05	0.0078	18.7	9.1	1	23	645	667	645	667	0.98
14	18	2.5e-05	0.0047	19.4	7.7	1	23	673	695	673	695	0.98
15	18	2.4e-05	0.0044	19.5	7.0	1	23	701	723	701	723	0.97
16	18	9.4e-05	0.017	17.6	0.4	1	23	729	751	729	751	0.97
17	18	0.13	25	7.7	5.0	1	23	761	783	761	783	0.98
18	18	2.8e-07	5.3e-05	25.5	0.9	1	23	789	811	789	811	0.96

Sequence Information

Coding Sequence: ATGCTTGGCCAACACGCTGGTCTTCTCCCGACGGACCCTTTGCTCCTGCAGCAACATCCACAAATCCCTGTCAGTATATCGTCTCAAGCAAATTTGGGAATACCCACAGGTGCTATACATCTTGATAACTCGCACAACTTAGCAAATCATCAGCATCAAAATGAAAATATGTCATCACAGAACCAGAATCAGATGTCCAGGGAAGTAAGGATGTCTCATTCCCAACAAAACCAACAGCACGGAGGACAACAGAACATGGTACAAGTTCAGGTGCAGGATAACTTGGTGTCGGTTATCGAAGATAATAAAGACCAAAAGGATCTTATTGCAGCCCAGCTGCAAGCTGCCCAATTGCAACTCAACGAAAACCAACTTAATCAACAGGGTTTAACGGTCCAACAATTGCAACATTTACAAGTTTTGGACAATGTgGTTCGTTTGGAAAATTCTGTTGAAAACAATCAGAATCAATCGAATAATGACCAGGACCAATTAAATGATACTATTCAAATTGTAAAAGATGAAAAAACACTTCAAAATTGTAAACTCCTTGCCGGTGCTCAATTTGGATTACAAGATCTTAAAGGAAATTTAATGGACGTGAGGACAGCTGATGGTAGTATTGTAAAAATACAAACCAATATGCAGGAGCAAGAGCTAGCTAAGACCTTGGGAGTTGAGATGGTGCAGAATATGTACAAAGTTAATGTGGATGATTTGAATCAGTTGTTGGCTTATCATGAGATTTTTGGAAAACTGCAAGGTCAGGgCGATATTACCAATACCAATCAGAACATTGTGCAAAATAACTCGAATAATCTTAACCTTCAACAAAATTCTGGTAATATCGCCATTATAGCAAAAGATGAGCACGGAGCTTCTACAAGCAACATTGATAATGCCAACCCTCCAGCCGTCGGCACTCACGTCTGTGATCTTTGTGGAAAAATGTTCCAGTTCCGTTACCAACTCATTGTGCATCGACGTTACCACACCGAACGTAAACCATTCACTTGCCAAGTATGTGGTAAAGCTTTTACGAACGCCCAGGAGCTTAGCAGGCACGGAAAATGCCACCTAGGCGGTAGTATGTTTACGTGTGCTGTGTGTTTCCATGTGTTTGCTAATGCGGCATCGCTAGAGCGTCACATGAAAAGACATTCGACCGATAAACCGTACGGTTGCACAATATGTGGCAAGAGTTTTGTCAGGAAAGAGCATTTGGACAACCACACTAGGTGTCATACAGGAGAGACGCCATACAGGTGCCAGTACTGCGCTAAAACATTTACCAGGAAAGAACATATGGTAAATCATGTGAGGAAGCATACCGGAGAGACTCCTCATCGatgtgaaatttgtaaaaaatccTTTACACGGAAGGAGCATTTTATGAATCATGTTATGTGGCATACTGGAGAGACACCTCATCACTGCACTATCTGTGGAAAGAAGTACACGAGAAAGGAGCACCTTTCCAATCATATGAGGAGTCATACGAATGATACACCTTTTAGATGTGAAATTTGTGGTAAATCATTCACAAGGAAGGAGCACTTCACGAATCATATTATGTGGCACACTGGGGAAACGCCCCATCGATGTGATTTTTGTTCAAAAACATTTACTAGAAAAGAACATCTATTAAATCATGTTCGGCAACATACAGGGGAATCACCTCATCGGTGTGAATATTGTGCAAAATCTTTTACGAGGAAAGAGCACTTAATTAATCATGTTAGGCAACATACAGGAGAAACCCCATTTAGATGTAATTTCTGTCCCAAAGCTTTTACAAGGAAAGATCACTTAGTTAATCACGTAAGGCAACATACTGGAGAGTCACCGCATAAGTGCACTTTCTGTACAAAGTCATTTACTAGgaaggaacatttaaataatcatgtTAGACAGCATACAGGAGAGTCACCTCATAGGTGTCATTTTTGTTCGAAGTCTTTTACTAGGAAAGAACATTTAACCAATCACGTTAGGATACATACAGGTGAATCCCCACACAGGTGCGAGTTTTGTCAAAAGACTTTCACTCGTAAGGAACATTTAACCAACCACTTACGACAGCATACTGGAGAAACACCCCATTGCTGCAATATTTGTAACAAACCCTACACCCGTAAGGAGCACCTAGTTAATCATATGCGTTCTCACACTGGCGAGCGTCCATTTGCCTGCAATGAATGCGGGAAATCGTTTCCTCTCAAGGGCAATTTGCTGTTCCATCAGAGGTCTCATAATAAAGGAGCCGGTGCCGAGCGACCATTCCGATGTGATCTGTGCGAGAAGGATTTCATGTGCAAGGGTCATTTGGTTTCTCACAGACGTTCTCATAGCGGCGATAGGCCTCATGCATGCCCAGATTGTGGTAAGACATTCGTAGAAAAAGGTAATATGTTGAGGCATATGAGGAAACATACAAACGAAAATGGCACGGCTGTGCAAGTTAATAATCTGGCCAATCAGCAAGTGAATCAGGTGCAGCAGCAGGGTAACCCTCAGCAACAACAAAACCCTCAAGCAAATTCCGGCAATATTCAAATACCACAAGTGCAGGTAAGCCAGGCACAGcagcagcaacaacaacaacagcagcagcagcaaCAGCAACAACAGAATTCCAATAGTAATATCGTTCAAACGTCGCACTTGCCAATGCACCCTCCCAATAATCATCCTGTTGTTGTGCCAACGGCAAACGGTAACGTTTTGGCCTCATATTAG
Protein Sequence: MLGQHAGLLPTDPLLLQQHPQIPVSISSQANLGIPTGAIHLDNSHNLANHQHQNENMSSQNQNQMSREVRMSHSQQNQQHGGQQNMVQVQVQDNLVSVIEDNKDQKDLIAAQLQAAQLQLNENQLNQQGLTVQQLQHLQVLDNVVRLENSVENNQNQSNNDQDQLNDTIQIVKDEKTLQNCKLLAGAQFGLQDLKGNLMDVRTADGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQGQGDITNTNQNIVQNNSNNLNLQQNSGNIAIIAKDEHGASTSNIDNANPPAVGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELSRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYGCTICGKSFVRKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCAKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICNKPYTRKEHLVNHMRSHTGERPFACNECGKSFPLKGNLLFHQRSHNKGAGAERPFRCDLCEKDFMCKGHLVSHRRSHSGDRPHACPDCGKTFVEKGNMLRHMRKHTNENGTAVQVNNLANQQVNQVQQQGNPQQQQNPQANSGNIQIPQVQVSQAQQQQQQQQQQQQQQQQNSNSNIVQTSHLPMHPPNNHPVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310750;
90% Identity: iTF_00110755;
80% Identity: -