Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000011.1:330760-338409[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.2 7.5e+02 2.3 0.3 1 23 159 184 159 184 0.94

2 17 3.2 5.6e+02 2.7 0.4 3 23 199 219 198 220 0.79

3 17 2.1 3.8e+02 3.3 3.8 1 23 226 248 226 248 0.97

4 17 0.00069 0.12 14.2 0.3 2 23 254 275 253 275 0.97

5 17 0.057 10 8.2 7.6 2 23 559 581 558 581 0.95

6 17 2.8 5.1e+02 2.9 1.0 1 23 647 669 647 669 0.82

7 17 3.5 6.2e+02 2.6 1.5 2 23 848 869 847 869 0.96

8 17 0.045 8.1 8.5 0.3 1 23 884 906 884 906 0.97

9 17 0.012 2.2 10.3 0.2 1 23 914 936 914 936 0.98

10 17 0.21 37 6.5 1.0 2 23 1035 1056 1034 1056 0.95

11 17 0.086 15 7.6 0.6 3 23 1068 1088 1066 1088 0.95

12 17 0.004 0.71 11.8 0.2 1 23 1165 1187 1165 1187 0.98

13 17 0.045 7.9 8.5 0.3 1 23 1263 1285 1263 1285 0.97

14 17 1.1e-05 0.0019 19.9 0.7 1 23 1291 1313 1291 1313 0.98

15 17 0.0066 1.2 11.1 2.6 1 23 1380 1402 1380 1402 0.97

16 17 0.0018 0.33 12.9 1.7 1 23 1408 1430 1408 1430 0.99

17 17 0.56 1e+02 5.1 0.6 2 23 1526 1547 1525 1547 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.2	7.5e+02	2.3	0.3	1	23	159	184	159	184	0.94
2	17	3.2	5.6e+02	2.7	0.4	3	23	199	219	198	220	0.79
3	17	2.1	3.8e+02	3.3	3.8	1	23	226	248	226	248	0.97
4	17	0.00069	0.12	14.2	0.3	2	23	254	275	253	275	0.97
5	17	0.057	10	8.2	7.6	2	23	559	581	558	581	0.95
6	17	2.8	5.1e+02	2.9	1.0	1	23	647	669	647	669	0.82
7	17	3.5	6.2e+02	2.6	1.5	2	23	848	869	847	869	0.96
8	17	0.045	8.1	8.5	0.3	1	23	884	906	884	906	0.97
9	17	0.012	2.2	10.3	0.2	1	23	914	936	914	936	0.98
10	17	0.21	37	6.5	1.0	2	23	1035	1056	1034	1056	0.95
11	17	0.086	15	7.6	0.6	3	23	1068	1088	1066	1088	0.95
12	17	0.004	0.71	11.8	0.2	1	23	1165	1187	1165	1187	0.98
13	17	0.045	7.9	8.5	0.3	1	23	1263	1285	1263	1285	0.97
14	17	1.1e-05	0.0019	19.9	0.7	1	23	1291	1313	1291	1313	0.98
15	17	0.0066	1.2	11.1	2.6	1	23	1380	1402	1380	1402	0.97
16	17	0.0018	0.33	12.9	1.7	1	23	1408	1430	1408	1430	0.99
17	17	0.56	1e+02	5.1	0.6	2	23	1526	1547	1525	1547	0.97

Sequence Information

Coding Sequence: ATGTTTCCTGCGGCGGGCAAGGGCGAGCGAAGAAGTCTGCGCGGAAGCGCGCGGCCCTCGTCCAAGATGTCGGGAAGGCTGCCCCGGTTGCGGGCATTGCGACCGCGGCCGCAGCAGCAGAGACGCGCGAAAACGGGGCTTGTTCTCGCCGTCGGCGCGACGACGCCGCGACCGGAAGGTAACCTTAAAGGGGCCGTCGCAGCGAGTCACGAGGTGGAGCACGATGCGAAGAGGCACGACGCGAAGAAGGGCGAACGCGAAGCCGAAGACACGGCCAGTACTGTGAGTCAGGCGAGTGTGATGGACGAGGAGGACAACGACGACGAGTTGACGATGACCGCCGACGACGatgaggaagaggaagaggaagaggaggaggaggaggaggaggaagaagcgATCCTGGACGTCGACGTTGACGTCGCGGTGAATACCGAGGAGACGATCGACGTCGAGGCGAGCGAGCAAGCGTCTTACGAGTGCAAGACCTGCGAGCCGTCCAAAACGCTGCCCAGTATCAAGGCCTACTTCGAGCATCTGCGAAAGGAGCACAAATACGAGgGCAAAAACGGGCACAGTCCAGTCGAAAATCGTTGCCCTGCGTGTTCGTATGTCGCATTGAACGTGAAAGATCTTGAAAATCACCAAAGAGTGCATCATttgaaaagaaaattctttcgaTGCGCAAAATGCGATTACGTGACGCACATGAGAGCGCGTTATACTAAGCATGTTAAATATCATTCTCTGCCGATGATCAAGTGCGATGCTTGTGATTTTAGTTCAGCGTATAAGTGGAATCTAGAAAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCATGTAATTTTACCGCTGATATCCGTCAGAGTTTAACGGTGCATGAATCGTATCATCATGACCCACCTGTGGGTCAGATCAACCGCAAAAGTAATAACGCTTTCGAACGTAAGCCACGAAATAGTCCAAAACGTTATAATCAGGTTGGAGCCAGTGACTTTCGAGAAGCGTTAAATAAAAACGGAAGTACAACCATGTCGGCCGGTTCCTCTGATTCGTTCGTATCAGATCACTCGTTAATTTCGTTAGACGATAAGAAAAGCGCCCTGGCCAGCGCGGAGTGCATCCGGTTAAAATGCGAGGAGAAAGGCTGCCAATTTAGAACATCCTGGGATTCCGAGATGCAAAGTCATTTAGCAGAATGCCACGCGCCGGTTGTCCCATCGAAGCCAAGAAAGCCACTGCCAATGTTGATTCCACTGAGCCTAGCGAGCTCTAAGCCCAATAACACGCTCACTAGTAGCGGGCCACCTACGACCCTCCTGAAGGTTCCGCGTGTCAGAGTGAGACCTGAACTGGCGCAAATCGCGAGAGATACAGAGCTGGCCAAGATGTACGGGAACAAGGAGGCCGCGAATTCGAAGAAGAATCTCAATACCGCGGCTGGTGTATTTGAGAGAAAGAATGCCTCCTTCTTCGATAAACTGAAGGAAAAACTAACGACGACAGCGACGTCAATTAATAACGGTGTGCCAGAGGTAGCTGTAAGTAGTGAGACAGACTTGAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAAGAGCTAGCTTGCCACAAACAGACACACCACACCGCGCTCAGCGTGTCCGTGGGCACGACACGTTGCCCTAAGTGTAGAAGACGTTGCAAGAGTACGACCGATCTCCAAACGCATATGCAATACTGCCATTCGCGCAACGACACGACGCCGTCCATCGATAGTAGTTTAGAGAAAGTAACGAATCGCTCAGATGTCCGCATGACCTTGTACCGTGACGAATACTCTTTTCCGTCGCAATTGGATTGGGACGCGAATCTCAGAGGACTTAATTCTTCTGGACCTTCGTTTGAAGGTGGTCCGACACATCCGAGCGGGCGGCGGGTATTCAAATGTCCCCATTGTCCGTTTTGGGCTTCCACCGCAAGTCGCTTTCACGTACATATAGTCGGTCATTTAAACCGGAAGCCGTTCGAGTGTTCAATGTGCGCGTATCGTTCTAACTGGCGATGGGACATCACAAAACATATTAAGCTTAAAGCGGCTAAAGACGCAGTGCATACGAGCGCCAGAGTGCTCATGACGGATGAGACAGGTCGACGGAATTATTCCAAATATAACAAATACCTCGCACAGGTAGAACAGCAATCGTGGGATGAGGATCGCATGGAGCAGCGTAGCATAGAGGAAACAAATTCTGAAGAATCGTCGACGAAGGTGTTGATCGTGGGCAATAAAGAGTACGTTCCAATGAGTGGTCCGGCGTCACAATCTCCCGTCACGATTTTACCGTCAAGCGAGGCAAGTCAGAACTGTCATAGCGTAGACGTAAGTCTGCGACCTCCGCCACCGCTCAAAGCAGCTCAAATCAGAAGTCGTGGGCAGTCTCTGTTGAAGAACAATCCTATCACGATGCATATCACCACCCCTAGTGGTGGTGGTGAGGTCTCCATATCCCAAGCGATGGATGAGAGTAAACGCACTCAGTGGAAGTGTAAACGTTGTAATTACCGAGATACCAACAAAAATAACGTGTTGTTACATGTTAAATCTCATTACGAATCTGCCGATCACGAGTCTATCGAAGAAAGGAATCTATTTAGTTGTGGGGATTGTCCGTTTTCAGCAACGGATGCTGCCACTCTGTCCCTTCACAGGATGCACCATCGGCCGAACTTAGAAGCTATATTCAAATGCTATCTTTGTCCATACTACGTTAGTACAAAGGCAGAACTGTTGGAGCACGCTAGGCTCCATGGAGAAGAGCTGGCAGCTATGCATCAGCATAATATGGATCTCCAGTTTTCAAATTCCAAGAATCAACTCCAACAAGTATCAATTTCCGAAAGCGGTGTTTCTCGAACGAAGGACGAATCGTCCATAGAACAAGTGATTCAGATAACATCACGCAACAACGTAACGGCGTCTTCAAAGGCTGCAGGAGCCCAGCCGCCACCCCCACCACCGTCGCTTCTTCTGGATACCCGTGCCCTTCCAGATGCTCCACTGGTTTGGGTATCGCGGCTAGATGGCACCTTGACGAAGATGCTTAAGTGTCGCCACTGTCCATATATTTCGTCGCGACGTGCGGAAGTACGCGACCACGAAACAATGCATGTAGACATACCAACTCACGGTCCCCTGATCGCCTGCACAGACTGTAGCTACACATGCTCGCGTCGAGAGGTCATGATCGCGCATACAGACATGCATGCGGGATCTCTCGGGACTGTTCACTGTCTTGTCGATGAGACGCGACCTGATTCCCAACAGGTGAGCGATCTGGCCACTCTGCTTGGCATGGCACACACTCCCGTGCTGGGCACCGAGCCCGATCTACAGGACTCGCGTTTGGTGCATTGCTGTGGCAAGTGCCCGGCACGGTTTCTGTGTGAGAAAGAGCTGCGTATCCACTTGCGTTACCACACCACGGAACTAGCGTATTCATGCCAATGGTGCTCATATGCAGCGCGACAGCCGGCGCATCTGTTGGCTCATCAAAAGGCGCACTCGACGGAGTATCAGGAGCGCACCAAGTACCTGTTGTCCTTGTACGGTCACTCGCAGCGTTATCCACCGCCCGCAACAGCGTGCGTCGAGGCGGGGAATCAGGAGGACAATGATAGCGCGCCGAACGTCGCGTGGATCGTCGTTGAGATCAACGAGAACGCGAATACGTCGTACAACAGTGTAAACGGCACCACGACGATTGTTCAGAGGCCCGGGGGTCAGGTGTTCACGTGCGCCAAGTGTCCGGCTCGTTACTTCAAACTGGATGCTTTGGAGTACCACATGACGCTTCACGGTTCAAACAATCGGTTCAAGTGTAATGACTGCGATTATTCGTCGAAAACGGCACAAAATCTAATGAAACATCAAGCGGTACATCGGCGACATACCGAAACCAGCGAAGTGACCGCGGAACTACCGTCTACCACGGTCACCACCGCCGACTCCGTTCCGACGTCCTCTCCCGAATCGCCACAGCAGTCGCCACCGGATCCGCAATTCGGTATCTTCATGCGCGGCAATCCGAATTTTGTTTATCCAGGTTACCTGAGGAATGGCCGTCTGAAGGAAAAACGCTACAAGTGTCACAAATGTCCGTCCGCTTTTGAAAAGCGCGAGCAATATAGAGTTCATTTGACCCTGCACGGTGCAAAACAACGCTATCGCTGCGATACGTGCGACTACTCAGTCAAATACTACGCGAATTACGTACAGCACCTGAAGAAACACCAGGCGAACGCGGAAGCGCAGGCATCACGCAGACAATTCGAGGACGATCGGATCTCGGTCGATAGCGACAGCATCACCGACATGGTTGCATCAACATCGTCGCGCAAGTCCTTGCGATCGTCTGCTACCGCTGTTAATATGCTCGCATTGTCTTTCGCTAACAACGCGTCCAATGTCAATAACAACGCCGCGCTACAACCCTCCAATCAGGATAAGCAGAGTTTGCTGCTGATGCAAAAGAAGGGCATCATTTCGTCAACGGGCGATGCCGACGCGGAGACGATCCGCTGCCAAAGCTGTCCGTTCTCCACCACCGACAAGGACGTCATGGACGCGCACAAACGTCGCCATGGCATCGAGCGCATGACGCCACCGTGTCCGCATTGCGACTACATTCCGCGGAAAGACGAGAATGTTGGTGAGCACATCAAGCTACACTTCACGAGGCTGTACAAGCCCGAGTCCTATCTCATCGTCGAGCTGCTAACGCTGACGATGGAGAAGGTATCCGCGAACAGCAAGAACGAAAAGGGTCAGCGGTTGAAGGAGCTATTGTTTAAGGAATGCGCCGACGGTAGATTCTTGCCGCTCACCGAGTCGATCAACTCTCTTTCCTTAGGTACCTCTACAGTGAAGTCTGTCAAGGAGAAGAAGGTCATCGTAGATCCAAACACGGGCGAGACCAAACATCATCGTCTTGCCACGTAA
Protein Sequence: MFPAAGKGERRSLRGSARPSSKMSGRLPRLRALRPRPQQQRRAKTGLVLAVGATTPRPEGNLKGAVAASHEVEHDAKRHDAKKGEREAEDTASTVSQASVMDEEDNDDELTMTADDDEEEEEEEEEEEEEEEAILDVDVDVAVNTEETIDVEASEQASYECKTCEPSKTLPSIKAYFEHLRKEHKYEGKNGHSPVENRCPACSYVALNVKDLENHQRVHHLKRKFFRCAKCDYVTHMRARYTKHVKYHSLPMIKCDACDFSSAYKWNLERHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGQINRKSNNAFERKPRNSPKRYNQVGASDFREALNKNGSTTMSAGSSDSFVSDHSLISLDDKKSALASAECIRLKCEEKGCQFRTSWDSEMQSHLAECHAPVVPSKPRKPLPMLIPLSLASSKPNNTLTSSGPPTTLLKVPRVRVRPELAQIARDTELAKMYGNKEAANSKKNLNTAAGVFERKNASFFDKLKEKLTTTATSINNGVPEVAVSSETDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKSTTDLQTHMQYCHSRNDTTPSIDSSLEKVTNRSDVRMTLYRDEYSFPSQLDWDANLRGLNSSGPSFEGGPTHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSMCAYRSNWRWDITKHIKLKAAKDAVHTSARVLMTDETGRRNYSKYNKYLAQVEQQSWDEDRMEQRSIEETNSEESSTKVLIVGNKEYVPMSGPASQSPVTILPSSEASQNCHSVDVSLRPPPPLKAAQIRSRGQSLLKNNPITMHITTPSGGGEVSISQAMDESKRTQWKCKRCNYRDTNKNNVLLHVKSHYESADHESIEERNLFSCGDCPFSATDAATLSLHRMHHRPNLEAIFKCYLCPYYVSTKAELLEHARLHGEELAAMHQHNMDLQFSNSKNQLQQVSISESGVSRTKDESSIEQVIQITSRNNVTASSKAAGAQPPPPPPSLLLDTRALPDAPLVWVSRLDGTLTKMLKCRHCPYISSRRAEVRDHETMHVDIPTHGPLIACTDCSYTCSRREVMIAHTDMHAGSLGTVHCLVDETRPDSQQVSDLATLLGMAHTPVLGTEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHTTELAYSCQWCSYAARQPAHLLAHQKAHSTEYQERTKYLLSLYGHSQRYPPPATACVEAGNQEDNDSAPNVAWIVVEINENANTSYNSVNGTTTIVQRPGGQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCNDCDYSSKTAQNLMKHQAVHRRHTETSEVTAELPSTTVTTADSVPTSSPESPQQSPPDPQFGIFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYVQHLKKHQANAEAQASRRQFEDDRISVDSDSITDMVASTSSRKSLRSSATAVNMLALSFANNASNVNNNAALQPSNQDKQSLLLMQKKGIISSTGDADAETIRCQSCPFSTTDKDVMDAHKRRHGIERMTPPCPHCDYIPRKDENVGEHIKLHFTRLYKPESYLIVELLTLTMEKVSANSKNEKGQRLKELLFKECADGRFLPLTESINSLSLGTSTVKSVKEKKVIVDPNTGETKHHRLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127818;
90% Identity: iTF_00766000;
80% Identity: -