Lace005359.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000029.1:15152-17905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.8e-05 0.016 17.1 4.3 1 23 258 280 258 280 0.99 2 12 0.16 28 6.8 4.5 1 23 285 307 285 307 0.97 3 12 3.7e-05 0.0067 18.2 1.1 2 23 317 338 316 338 0.97 4 12 0.00013 0.023 16.5 6.4 1 23 430 452 430 452 0.97 5 12 0.00025 0.045 15.6 1.3 1 22 457 478 457 481 0.91 6 12 1.2e-05 0.0021 19.8 1.2 1 23 520 543 520 543 0.96 7 12 2.4e-05 0.0043 18.8 2.6 1 23 574 596 574 596 0.99 8 12 0.0002 0.036 15.9 4.0 1 23 610 632 610 632 0.96 9 12 0.00019 0.034 16.0 4.7 1 23 638 660 638 660 0.98 10 12 0.00033 0.059 15.2 3.1 1 23 666 688 666 688 0.98 11 12 5.8e-05 0.01 17.6 6.5 1 23 694 716 694 716 0.98 12 12 0.00027 0.047 15.5 0.3 1 21 722 742 722 743 0.93
Sequence Information
- Coding Sequence
- ATGCATCCCGACAGCGGGATGTTGACGCGGATGAATCCGGACACCAGCCTCTGCCGCGTCTGCCTGACCGTGGACCACAACAACCAGTGCATCTTCCGCAGGAACTGGGAGGACGGTCCCGACGACTCCTCCGGGCTGTCGGAGAAGCTGCAGTTATGCTGCGGCGTGGAGGTGCTGGAAGACGATGGCCTGCCCGCTAGCATCTGCCTCGAGTGCGTGATGAAAGTCAACATCGCCTACGAATTGAGGAAACAATGTCAGAAAGCAGACGTGGAACTCAGAAAGCTGTACGGGAAAGCCTCGAGGACAGATGTTGGCAGCAGCTGCACTCCTACAAAAGATCAATGTTGTCAAACTGAGCAATTTCTTATCTTGGGTGCAATTAATTTGGAGAGTAATGCGGATAGTGAAGTTAACATAGAGAAGAATACCATGCAATCGAATGTCATGAGACAAGAACAAATACCAGATGCTTTCGAACAAACCAAGCAGGATGTTCCAGTAGACAGTGAAACAGATTTAGACTGCGGTAGTAGATATAAACAGGTAGAACATGACAAAATAGCTAAAAAGGATCTTTATAGAACAAGAAGATTAACTATGTTTAAAAGGGTCACATCCATagaaaatttgaagaattacAAGGAGAGACAGAGACGATATATCAAGAAGAGTGTGAATGTGAAGCGCGAAAGCAGCGATGGCGAGTATCAAGCAAAGGCGAGAAATGCCCATGGCAGGACGGACAGAACGTCCGAGCTcgaattacaatataaatgtcAGAAATGTGATAGATTTTATTCCAGTAAGAAGTCTTTAGATAGACACACGTCGACCCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTAGATAAATTACGTAAACACGTTAATCTGCACAGAACGAAGGAGAAGCCGAAACCGGTGTCGTGCAAAATCTGTAATAAGAGTTTCAGGAAGATCGACACCATGGTTAGGCACCTGAATACTCACAAGAAGGCCTATCCCAAGGATGTTTTTTCCATCCTGAAAGAGATACGGGACAAGAGAAAGTTAGAAAATAATCCCGAGTCCTTTGAAACGCCACTTACGATGGACGTGGACGAAGAAACACAGGCGCACGATGGTCAGTTACATAGTGAGAACGACGGCACGACGAGAGAGCTGAGGAAACGTAACAATGCAAGAGTGGAACAAAGAGACTCGGATTTGGTAAATAGCGACTCCAGCGATGATAAAACCGAGTCCTTCGACGATACGTCGCTCTTCCACTGCAAACACTGCAGCAAGAGTTATCGTACCGAAAGGTCGCTTCAACGTCATCTGCTAGTACACGAGGAAAAGAAGTACGTCTGCAACGTCTGCAACATGAAGTTCTTCCGACAGGACAGGCTCAAGAGCCACATGGATCGTTACGGTCACGACGAAACCAAGGTGTGCTCGGAGCCGCAAAAGCCGCCGGACGACAAGTCGGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAGCTGGATTCCGATAACGAGGGCAAGGGCTTCCCGTGTAGAGTCTGCGGAAAATCGTACGACACGAAGAAGTCATTGTTGAAGCATCAGATGAACACGCACGGCGGACAGGACGAGGGCTGCGCGAGCTGCGGCACCGTTTGCAATTGCGCGTACAAGGATCAGGAGAAGAGCAACGAGAAGTCGAAGCCGTACACCTGCGAGGAGTGCAACAAGTCGTTCGAGAAGGAGATCAAGTTGCACAAGCATCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGTTTTCTCTGTCACATATGCAGCAAGACGTTCCGGCAGAATACCGGTCTCATGTTCCACATGAGAACGCACACGGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACGTCCAACTCGAACTGCATCAATCACGAGAGGACTCACACGGGCGACCGGCCTTTCGTCTGCCATTACTGCAGCGCCGCGTTCGCCAAATCGTGCACCCTAAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAGACCTGCGGCAAGTCGTTTCGCCGATTGAAGTACTTGAAGGAGCACAGATTCACGCATACGGGCGAGAAGCCGTACGCGTGTAAAATCTGCGGCACCGCCTACAGCCATTCCGGCAGTCTGTTCGTTCACGAGAAGAAGTGCAAGGCCCAGTACAATAATTATCAGCCGGGGATTCCGCAAAACGCGCAGCAGCAGGTTTCCTACGGTCAGTCTCCTCAGACCACCGGCGACATTTCCATGGCGCCCACTTCTTCGATTGTCGCTCCTATCATCACTACGCTGCCTCAGGCTCACCTAAATGTCATCAACAGCACGCTGAATGTACAGACGAACAAAGGCTACATGGACAATGTTCAGCGAATGAACGCGCATGCGGCGGCTAACGCGACCACGGTCGTCTCGCCGGGTCTGCACCCGAATGTCGACATCTCCGAGATGAGTTCCGCCGTGAGGAACTTCTCTATCATCGGGCAGATGTTTCACACTTAG
- Protein Sequence
- MHPDSGMLTRMNPDTSLCRVCLTVDHNNQCIFRRNWEDGPDDSSGLSEKLQLCCGVEVLEDDGLPASICLECVMKVNIAYELRKQCQKADVELRKLYGKASRTDVGSSCTPTKDQCCQTEQFLILGAINLESNADSEVNIEKNTMQSNVMRQEQIPDAFEQTKQDVPVDSETDLDCGSRYKQVEHDKIAKKDLYRTRRLTMFKRVTSIENLKNYKERQRRYIKKSVNVKRESSDGEYQAKARNAHGRTDRTSELELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLRKHVNLHRTKEKPKPVSCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETPLTMDVDEETQAHDGQLHSENDGTTRELRKRNNARVEQRDSDLVNSDSSDDKTESFDDTSLFHCKHCSKSYRTERSLQRHLLVHEEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKVCSEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRVCGKSYDTKKSLLKHQMNTHGGQDEGCASCGTVCNCAYKDQEKSNEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPGIPQNAQQQVSYGQSPQTTGDISMAPTSSIVAPIITTLPQAHLNVINSTLNVQTNKGYMDNVQRMNAHAAANATTVVSPGLHPNVDISEMSSAVRNFSIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765856;
- 90% Identity
- iTF_00765856;
- 80% Identity
- -