Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000076.1:568781-571861[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.7e-06 0.00048 21.8 1.7 1 23 258 280 258 280 0.98

2 9 2.6e-08 4.6e-06 28.2 1.6 3 23 288 308 286 308 0.98

3 9 0.0002 0.036 15.9 0.4 1 23 314 336 314 336 0.98

4 9 1.1e-06 0.0002 23.0 1.5 1 23 342 364 342 364 0.99

5 9 2e-05 0.0035 19.1 1.7 2 23 478 499 477 499 0.96

6 9 2.5e-09 4.5e-07 31.3 1.6 1 23 505 527 505 527 0.98

7 9 0.00057 0.1 14.5 0.6 3 23 535 555 533 555 0.97

8 9 7.6e-05 0.013 17.3 1.4 1 23 561 583 561 583 0.99

9 9 0.017 3 9.9 0.8 1 23 589 613 589 613 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.7e-06	0.00048	21.8	1.7	1	23	258	280	258	280	0.98
2	9	2.6e-08	4.6e-06	28.2	1.6	3	23	288	308	286	308	0.98
3	9	0.0002	0.036	15.9	0.4	1	23	314	336	314	336	0.98
4	9	1.1e-06	0.0002	23.0	1.5	1	23	342	364	342	364	0.99
5	9	2e-05	0.0035	19.1	1.7	2	23	478	499	477	499	0.96
6	9	2.5e-09	4.5e-07	31.3	1.6	1	23	505	527	505	527	0.98
7	9	0.00057	0.1	14.5	0.6	3	23	535	555	533	555	0.97
8	9	7.6e-05	0.013	17.3	1.4	1	23	561	583	561	583	0.99
9	9	0.017	3	9.9	0.8	1	23	589	613	589	613	0.95

Sequence Information

Coding Sequence: ATGGAGAGACCCCAGGGTCAGTGGGGCCCGGGGCCGGGATCTCTCCAGGACGGTGGACTGTAcccgcagcagcagcaacaacagcagcagcaacagggTTCCTCCTCGTCGGGAAGTCCACAGCAGGCCTGTGGACCTCCAGTCGAGGGCGGTGAAAGCGGTCCCCCGCCCTCGTTAGCCTCGCCCGTGCCCTCACCATATCCCTCGGCGCCTCCCGAGCCTCAATCCTTGACTCCGCCGGACGATGACATACAATCGAGTCAAGCCACGtcccagcagcagcagcaacaacaacagcaacaacaaacGCAGCAGCAGgtccagcagcagcagcagcagcagcaacaacaacaacagcagcagcagcaacagcaagtTCAACAGCAACctcaacaacagcaacaacaaacGCAACAGCAAGATCACTCGCCGCAACAACAATTGACTCCTCACGCAGAGGTGGATCGCAACGACTGCTTTCCCGGCGCCGGAGAGCTGCAGCAATATCCGCAGCATTATTTCAAAGAGGCCCGGCCACACCCCTCACCGTCCGTGCCGCCGCATATGCTCACGCCCGGCGGCTTCTCCGCGCTGCACTATCTCAAGCAACCTGGAGTAATGCTGACGTCTCTCGGCCAAGGCGACGGCGGGCCCGGTCTGGACGCGCATCAGTACGCGAGTCCGGGCGCGCCGAATATGGCGACTGGGCTGCCTGACATCGTGCAGCAGAGCGGCAAATCGTCCAAGGCCGGCAACAGCGATTTACGTCTGTTCAAGTGCTTAACCTGCGGCAAAGACTTTAAGCAGAAGTCGACTCTGCTGCAGCACGAGCGGATCCACACAGACAGCCGGCCGTACGGGTGTCCAGAGTGCGGCAAGCGGTTCCGTCAACAATCCCATCTCACGCAGCATCTACGCATACATGCTAACGAGAAGCCGTACGCTTGTGTATACTGCGAACGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGCCCGCACCTCATCTTCAAGAACGGAATGACGCCGACCCTCTGGCCGCAGGATGTTCCCTTTCCTCCCGAAGAGGGTAAGGAGGAGGTGGCGTCGACATTCGGCGACACGGACACGCAGTCGGGCGCGTTTAGTCCGGCGCCGGACGCTAACTCTATCCAGTATCCGGCATACTTCAAAGATCCAAAGGGCGGCAATCACGCGGTCTTTGGCGCGGGCGGTTCGGGCAGCTTCGGTGCCTTGCAGTACATCAAGCAGCAGGGTGGCACGAAGAGCTGTCTACCCGATGTGATACAGCACGGTCGTTCGGCTGGCATGCCGTTGTACGTGCGTTGTCCGATCTGTCAAAAGGAGTTCAAGCAGAAGTCCACGCTGCTGCAACACGGATGCATACACATCGAGTCGCGGCCGTATCCTTGCCCGGAGTGCGGCAAGCGGTTCCGACAACAGTCCCACCTCACGCAGCATCTGCGCATCCACACGAACGAGAAGCCGTACGGCTGCGTGTACTGTGGACGTAACTTCCGCCAGCGCACGATCCTCAATCAGCATCTACGTATCCACACCGGTGAGAAGCCTTACAAGTGCCAGCAGTGCGGCAAGGATTTCCGCCAAAAGGCGATCCTGGACCAGCACACGCGCACTCACCAGGGTGACCGGCCGTTCTGTTGTCCGATGCCCAACTGCAGGCGGCGCTTCGCCACCGAGCCCGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAAGTGCGCCGGAACTCGAGCGGTGACACGAAGCCGCCCGGTACGCCCGCGGGCTTGGGTCCGGTACCCGTGCCCCGCGGCCTCACGCCGACGGTCGTCAAGCCGGAGCTCTACTTCCCGCAGTGCTATGCGCCCGCGTTCAACCATCAGCCGCCGGTCTCCACCGCGCAGTTCCCTGGCGCCCAGACGAACGGCGTGTCCGTGACCGGCGAGTTCAAGCCACCGACCGGTCTGCCGCCGCAGTGA
Protein Sequence: MERPQGQWGPGPGSLQDGGLYPQQQQQQQQQQGSSSSGSPQQACGPPVEGGESGPPPSLASPVPSPYPSAPPEPQSLTPPDDDIQSSQATSQQQQQQQQQQQTQQQVQQQQQQQQQQQQQQQQQQVQQQPQQQQQQTQQQDHSPQQQLTPHAEVDRNDCFPGAGELQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPGLDAHQYASPGAPNMATGLPDIVQQSGKSSKAGNSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGSGSFGALQYIKQQGGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSGDTKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPGAQTNGVSVTGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684322;
90% Identity: iTF_00684322;
80% Identity: -