Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000027.1:277793-283552[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00014 0.025 16.4 1.8 3 23 114 134 112 134 0.95

2 20 0.00053 0.095 14.6 0.1 1 23 140 163 140 163 0.97

3 20 0.00076 0.13 14.1 3.9 1 23 172 194 172 194 0.97

4 20 4.3e-06 0.00076 21.2 0.1 1 23 198 220 198 220 0.95

5 20 4.2e-05 0.0075 18.1 1.3 1 23 226 248 226 248 0.98

6 20 1.9e-07 3.4e-05 25.4 1.7 1 23 254 276 254 276 0.99

7 20 0.026 4.6 9.3 0.4 5 23 419 437 418 437 0.96

8 20 0.00081 0.14 14.0 1.3 1 23 443 465 443 465 0.97

9 20 1.6e-07 2.9e-05 25.6 0.2 1 23 471 493 471 493 0.98

10 20 2.8e-06 0.00049 21.8 0.7 1 22 499 520 499 520 0.96

11 20 6.8e-08 1.2e-05 26.9 0.1 1 23 646 669 646 669 0.96

12 20 0.0031 0.56 12.2 2.9 1 20 681 700 681 701 0.95

13 20 1.9e-05 0.0033 19.2 0.9 1 23 705 727 705 727 0.95

14 20 1.3e-06 0.00024 22.8 0.2 1 23 733 755 733 755 0.99

15 20 2.4e-05 0.0043 18.8 2.5 1 23 835 857 835 857 0.98

16 20 4.5e-06 0.00081 21.1 1.3 1 23 863 885 863 885 0.99

17 20 0.005 0.88 11.5 0.4 1 23 890 912 890 912 0.98

18 20 0.00046 0.082 14.8 3.0 1 23 918 940 918 940 0.97

19 20 2.5e-05 0.0045 18.8 0.5 1 23 946 968 946 968 0.98

20 20 3.5e-06 0.00062 21.5 3.6 1 23 975 998 975 998 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00014	0.025	16.4	1.8	3	23	114	134	112	134	0.95
2	20	0.00053	0.095	14.6	0.1	1	23	140	163	140	163	0.97
3	20	0.00076	0.13	14.1	3.9	1	23	172	194	172	194	0.97
4	20	4.3e-06	0.00076	21.2	0.1	1	23	198	220	198	220	0.95
5	20	4.2e-05	0.0075	18.1	1.3	1	23	226	248	226	248	0.98
6	20	1.9e-07	3.4e-05	25.4	1.7	1	23	254	276	254	276	0.99
7	20	0.026	4.6	9.3	0.4	5	23	419	437	418	437	0.96
8	20	0.00081	0.14	14.0	1.3	1	23	443	465	443	465	0.97
9	20	1.6e-07	2.9e-05	25.6	0.2	1	23	471	493	471	493	0.98
10	20	2.8e-06	0.00049	21.8	0.7	1	22	499	520	499	520	0.96
11	20	6.8e-08	1.2e-05	26.9	0.1	1	23	646	669	646	669	0.96
12	20	0.0031	0.56	12.2	2.9	1	20	681	700	681	701	0.95
13	20	1.9e-05	0.0033	19.2	0.9	1	23	705	727	705	727	0.95
14	20	1.3e-06	0.00024	22.8	0.2	1	23	733	755	733	755	0.99
15	20	2.4e-05	0.0043	18.8	2.5	1	23	835	857	835	857	0.98
16	20	4.5e-06	0.00081	21.1	1.3	1	23	863	885	863	885	0.99
17	20	0.005	0.88	11.5	0.4	1	23	890	912	890	912	0.98
18	20	0.00046	0.082	14.8	3.0	1	23	918	940	918	940	0.97
19	20	2.5e-05	0.0045	18.8	0.5	1	23	946	968	946	968	0.98
20	20	3.5e-06	0.00062	21.5	3.6	1	23	975	998	975	998	0.96

Sequence Information

Coding Sequence: ATGATCAAGAGGAAAATTTTCGAAGTTGGAGAGTTGATAGGACGAGGTATCAAGATTGAGCGTAACGAAGAGGAATTTGAGGAGTACAACCATATGCAGATAGAGATAGATTCGATGGTTAAAGATTTGGTGATTAAAGAGGAAGAGTCTTTTAACGTGACATATAagaaggaggagaaggaggaggaggaaaaggaaACAACGTCGGAGGAACCTTTTAACGCGGTATATAGTGATGATTTAAAAAACACCTGGATTAATGCCGAACAAAGAATAGAAAAGGGAGGTGAGCGTGCGAGGATCCACGTTCGACGCCACAAGCGCGACTTTCGACACCTTTGCGAACAGTGCGGCAAGGTATTCATAAAGAAATACGATCTCGAGGATCATAAGACGAGGCACCTAGGCGTCAAAACTTTCGTTTGTGACGACTGCGGCAATGCATACTTGCAGAAATCATTCCTGATCGCACACATGCGCGTGATGCACAGAGTTCATAAAACACCGAAGCAGCATCAATGTGACCTTTGCAATAAGAGCTTTGTCTCGGAGCTTAATCTTCGTGATCACACGTGTCTGCACTCGCAGACGTTCCTGTGCGCCATATGCGGCAAGGAATTCGCGAGGAGTCAAGCACTGAAGGAACATCAACGTATACACACTGGCGAACGGCCCTACCAATGTAAATTGTGCCCGAAAGCTTTTGCGAGGATTCAGAGTCTCAGGGCGCACAAGTGCGTTCATACGGGCGACAGACCATACGAGTGCGATATCTGCGAAAAGACTTTCACGCAACGTAGCGGTTTGAAGAGTCATCGTCGGAGACATCAGTATTCACCGCCGTCGTCATCATTGCTAATTTTCGAGGTCGGAGAGTTGATAGGACAAGGTATCAAGATAGATCGTAGCGAAGAGGAATTTGTGGAGTACAACCATACGCAGATAGAGATAGATTCGATGGTTGAAGATTTGGTGATCAAAGAGGAGTTTTTTAACGCCGTATATAGTGAGAATTTCAAAAATACTTCGATTAATTCcgaaaaaagtaaagaaaagagAAGTGAGTGTGCGAGGTTGATAGGACGAGGTATCAAGATTGAGCGTAGCGAAGAAGAATCTGAGGAGTACAACCATACGCAAATAGAGATAGATTCGACTGTCGAAGATTTGGTGATCAAAGAGGAGAAGCCTTTTAACGCGGCATATAGTGAGAATTTCAAAAATACTTCGATTAATGCcgaaaaaagaatagaaaagtGTGGCATGATCTCGAGGAATAAATATTCGTTCAGGGTCCACGTTCGACGGCACAAGCGCGACTTTCAACACCGTTGCGAACAGTGCGGCAAGGGATTCATAATGAAATACGAACTCGATGATCATAAGATAAAGCACCTAGGCGTTAAAACCTTCGTTTGTGACGACTGCGGCAATGCTTTCTCACGGAAATCAAACCTGATCGCACACAAGCGCGTTCATACGGGCGACAGACCATACGAGTGCGATATCTGCAAAGAGACTTTCACGCAACCACAAAGTTTGAAGAGGCATCGTCGGAGATATCAGTATTCACCGTCGTCAATTTTCGAGGTCGGAGAGTTGATAGGACAAGGTATCAAGATTGAGCGTAGCGAAGAGGAATTTGTGGAGTACAACCATACGCAGATAGAGATAGATTCGACGGTCGAAGATTTGGTGATCAAAGAGGAGAAGCCTTTTAACGCCGCATATAGTGAGAATTTCAAAAATACTTCGATTAATTCcgaaaaaagtaaagaaaagagAAGTGAGTGTGCGAGGTTGATAGGACGAGGTATCAAGATTGAGCGTAGCGAAGAAGAATCTGAGGAGTACAACCATACGCAAATAGAGATAGATTCGACGGTCGAAGATTTGGTGATCAAAGAGGAGAAGCCTTTTAACGCGTCTCAAACCTTCGTCTGTGACTACTGCGGTAATGCTTTCTCACGGAAATCAAACCTGATCGCACACATGCGCGCGATACACATAAAACGCCGAGTTCATAAAACGCCGAAGCAGCATAAATGTGACCGTTGCGATAAGAGCTTTGTCTCTGAGCTTAATCTTCGTGATCACACGTGTCCGCAGATGTTCCTGTGCGTTCAATGCGGCAAGAATTTCGCGAGTAGTCGATCACTGAAGGTACATCAACGTCAACACACCGGCGAACGGCCCTACCAATGCGAATTGTGCCCGAAAGCTTTCCCGAGGGCTCAGAGTCTCAAAGCGCACAAGCGCGTTCACACGGGCGATAGATACAAAATTTTCGAGGTCGGAGAGTTGATAGGACGAGGTATCAAAATTGAGCGTAGCGAAGAAGAATCTGAGGAGTACAACCATACGCAGATAGAGATAGATTCGACGGTCGAAGATTTGGTGATCAAAGAGGAGAAGCCTTTTAACGCGGCATATAGTGAGAATTTCAAAAATACTTCGATCAATGCcgaaaaaagaatagaaaagaGAGGTGAGCGTGCGAGGTACGAATGTTCCGTATGCCATGTGACTTTCACTCGGAACAGTATGTACAAGGTTCACATGGTGAAGCACAGCGACGAACGTCCGTATAAGTGTATGGTTTGCGAGAAAAGCTTCAAACGCAAGGATGCAATGAACTATCATATGCAGATTCACACTGGCGTTACGTATACTTGCGACCTGTGTGGCTTGATCTCAAGGAATATATATTCATTCAGGGTCCACGTTCAACGGCACAAGTGCGACTTTCGACACCGTTGCGAACAGTGCGGCAAAGGATTTATGAAGAAATATGATCTTGAGGATCATAAGACGAAGCACCTAGGCGTTAAAACCTTCGTTTGTGACGACTGCGGCAATACTTTCTCGAGTATTCGGAGTCTCAGAGAGCACAAGCGCGTTCATACGGGCGACAGACGACCATACGAGTGCGATATCTGCGAAAAGACTTTCACGCAACGTAAAAGTTTGAAGAGGCATCGTCACAGTATTCACTTATTGCTGTCAACTTGA
Protein Sequence: MIKRKIFEVGELIGRGIKIERNEEEFEEYNHMQIEIDSMVKDLVIKEEESFNVTYKKEEKEEEEKETTSEEPFNAVYSDDLKNTWINAEQRIEKGGERARIHVRRHKRDFRHLCEQCGKVFIKKYDLEDHKTRHLGVKTFVCDDCGNAYLQKSFLIAHMRVMHRVHKTPKQHQCDLCNKSFVSELNLRDHTCLHSQTFLCAICGKEFARSQALKEHQRIHTGERPYQCKLCPKAFARIQSLRAHKCVHTGDRPYECDICEKTFTQRSGLKSHRRRHQYSPPSSSLLIFEVGELIGQGIKIDRSEEEFVEYNHTQIEIDSMVEDLVIKEEFFNAVYSENFKNTSINSEKSKEKRSECARLIGRGIKIERSEEESEEYNHTQIEIDSTVEDLVIKEEKPFNAAYSENFKNTSINAEKRIEKCGMISRNKYSFRVHVRRHKRDFQHRCEQCGKGFIMKYELDDHKIKHLGVKTFVCDDCGNAFSRKSNLIAHKRVHTGDRPYECDICKETFTQPQSLKRHRRRYQYSPSSIFEVGELIGQGIKIERSEEEFVEYNHTQIEIDSTVEDLVIKEEKPFNAAYSENFKNTSINSEKSKEKRSECARLIGRGIKIERSEEESEEYNHTQIEIDSTVEDLVIKEEKPFNASQTFVCDYCGNAFSRKSNLIAHMRAIHIKRRVHKTPKQHKCDRCDKSFVSELNLRDHTCPQMFLCVQCGKNFASSRSLKVHQRQHTGERPYQCELCPKAFPRAQSLKAHKRVHTGDRYKIFEVGELIGRGIKIERSEEESEEYNHTQIEIDSTVEDLVIKEEKPFNAAYSENFKNTSINAEKRIEKRGERARYECSVCHVTFTRNSMYKVHMVKHSDERPYKCMVCEKSFKRKDAMNYHMQIHTGVTYTCDLCGLISRNIYSFRVHVQRHKCDFRHRCEQCGKGFMKKYDLEDHKTKHLGVKTFVCDDCGNTFSSIRSLREHKRVHTGDRRPYECDICEKTFTQRKSLKRHRHSIHLLLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -