Lace010427.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000065.1:210366-211331[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 2.5e-05 25.3 0.0 2 40 34 71 33 75 0.89
Sequence Information
- Coding Sequence
- atgCCAAAAAGAAAGTGCCATAAATCTGTTAAGAAAAAACAGAAGTTTTCCACAACCAAGGAAAATCAACAGCAAAAGAGAAAGTTATTTTTGTATTCACCAACAAAGGTACGAGAAGCTTTAGTTGCTATTCAGAATGGTACACCAGTCTCGACAGCAAGTAAAATTTATCAAGTACCAAGAACAACTTTGCGACATAAAATTCGAGGTAAAGCACCAGTGACCACTGGACATGTAGATCCTGAATCAGTATTAGGTTCTCGTGTAGAAGCTATTTTGGTGGATTGGCTGTTGGAAACATGTCGAATGGGATTTCCTATCACAAAAGATGTTTTGTTGaattcagtaaaaaaatttgttgaaaccGAACATTTAGAAACTCCATTTACAAATAACACGCCAGGACGTAAATGGTTTGAGAACTTTATGAAACAACACCCTGCTTTATCTATGAAGAAAGCTGAATACTTAAGTAAGACAAGAGCAGCTGTTACTGAACAATATATTCGTAATTGGTTTTCTGAAGTACAGATTTTACTAAAGGATAATTTACAAGTTCTTGAATACCCGCAAAGAGTATTCAACATGGATGAGACAGCAGTGTATTTAGCTCCTAAAAGAGGATTAGTTATTGCAGAGAAGGGAAAACCAACGTATGATGTTTTTACTAGCAgtgataaagaaaatattaccaCGCTCTTTACTGTGAATGCTGCAGGAGAACTAGCGCCACCTCTAACAGTTTTTAAGTACGAACGATTGCCTCAAGCTTGTTTAGCCAAAGCTCCACCTGGTTGGGGCATCGGTAAAAGTGAAAATGGATGGATGACATATACAGCTTTCTACGAGTATTTTgcaaatgtttttaataaatatctacaagATGAGAACATAAAAAAAACCAGTTATTGTTTTCCTAGATGGACACATATCACATATGTCATATTGCTTAAGTGCTTTTTGTAA
- Protein Sequence
- MPKRKCHKSVKKKQKFSTTKENQQQKRKLFLYSPTKVREALVAIQNGTPVSTASKIYQVPRTTLRHKIRGKAPVTTGHVDPESVLGSRVEAILVDWLLETCRMGFPITKDVLLNSVKKFVETEHLETPFTNNTPGRKWFENFMKQHPALSMKKAEYLSKTRAAVTEQYIRNWFSEVQILLKDNLQVLEYPQRVFNMDETAVYLAPKRGLVIAEKGKPTYDVFTSSDKENITTLFTVNAAGELAPPLTVFKYERLPQACLAKAPPGWGIGKSENGWMTYTAFYEYFANVFNKYLQDENIKKTSYCFPRWTHITYVILLKCFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01355233; iTF_01423580;
- 90% Identity
- -
- 80% Identity
- -