Lace039024.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000983.1:28009-28398[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-08 3.9e-05 24.7 0.0 1 38 13 50 13 55 0.91 2 2 3.6 3.7e+03 -0.8 0.1 31 37 84 90 83 91 0.85
Sequence Information
- Coding Sequence
- atggtacgcacgtatcgtcgcaaaacgactcccgtcgacgaGGAGAAACtgaagaaggcagttcttgcggtaaaaatagataaaatgaGCGTTtccgcagccgcaaaacaattcgatgtccgaagaaccacgttgaacaactggttgaagaagaacgaTGAGATAGAACACCTTGATGACGTGGTCGCACTACATAAAGGATCCTTCTCGgttTTGGACTGTGAAACTGAAAAGACTAgtggaatacttagtacattgcaacgatatgtactttgggctctctgcgaaggaaacccgtggtttagcctttga
- Protein Sequence
- MVRTYRRKTTPVDEEKLKKAVLAVKIDKMSVSAAAKQFDVRRTTLNNWLKKNDEIEHLDDVVALHKGSFSVLDCETEKTSGILSTLQRYVLWALCEGNPWFSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -