Lace025023.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- clz9_1
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000300.1:14658-17209[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 3.3e-06 28.1 0.0 2 40 40 77 39 79 0.92
Sequence Information
- Coding Sequence
- ATGCATTCCAGAGTTGGCTATGTTGGCCAGTGTTGGCACACCTTAGCGGTGGCGATAGCGAATGTAAAATTGCCGATTTTTAGTATCATGAAAAGGAAGTCTGCTCCAATGTACACAAATGCTATGCTCAAGGAGGCCTTAGACGCAGTAAAGAGAGGGATGCCTACCAGCACTGCATCAAAGCTGTACAGTATTCCAAAAACTACGTTGCTGTACAAAAAACGTGGCATATTGCCACCTGTTATTAAAAGTCGAGGACCTGAGTGTATACTTGGAGATGAATACGAACGCCAACTCGTACAGTGGATTTTTTATACGAGCCAAAGAGGATTTCCTGTGTTACGGGTTCACCTATTAGATAGCGTTCAACTGCTGCTGAAGCAGATAAAGAAGAAGacgaaatttataaataatcgtCCTGGGAGACAGTGGTATGATGCCTTTCGTGCGCGTCACAAACATTTAACTGAACGAATGTCTCAGAATTTGACGTACAGTCGAGCCTCAGTAACGGAAGATAAGCTGCGAGTGTGGTTTAACGAGGTGCAGATGTATTTTGAATCGAAGTCGCTCCTTGATATTGATCCTTCTCGTGTATTCAATTGCGATGAGTTCGCATTCTTTCTGAGCCCAAAAGAAAGCAAAGTATTAGTCAAGAAAGGTGAcaaaacgattaattttataaataacgatGAAAAGGAATGCTTGACTGCGCTCCTCTGTGGAAGTGCGGACGGAAAAATTGCACCACCGATGGTAATTTTCTCATATAAGCGAATCCCCGGACACATCGCCGCAAACATGCCAAAAGACTGGGGCATCGGACACTCTGAGAATGGATGGATGACTGGAGAAACGTTTTACGAGTACATCGCAAATATCTTTTACCCGTGGTTGGTGAAAAATGATATCATGTTCCCAGTCGTGTTGTTCTTAGACGGACACACTTCGCATTTAACGATGGCGTTAAGCAATTTTTGCAGAGAGAAAGGAATAGAGCTCGTTGCTCTATACCCGAATGCAACGCACATACTGCAACCGTTAGAGGTCGCATTTTTTCATCCTCTAAAGATAGCGTGGGTGAAGGTAGTGCATCAATGGAGACTCGAGAATAACGGCAAACGTATAAAACGAGCAAATTTCGCACAGCTCTTGCAGGAAGCCCTCGAAATGCTGGACGTGAAAACAATTCTGGAAAACGGATTTGAAAAGACTGGGCTCCACCCTTTTTCGGCGGACGAAATTAGTTATCAGACGTATTTCAAAAATTCGGTAAACTATGACGCAATAACAATTCCTCAAATTATTCTGAGCGACAGAGCTGAAAAAGAAGATCACTTAGCGTTTTTCGAGAATAATATCGAGAAGGAGGTCCTACAAATGTTCAAGAACGTCGGAGAGGAGGCTGAATGGACTGGCGAAACAAAACACAAAAGCCTGTTTTACTTCTGGCGAAAGATTAAGAGTAAGATCAACTCCAGCGAAGCCAGTCATGGTATCTCCGGAAAGTCCGAAGACAGCTTTGTCGAAGAGACACACGTAGTTGACGAAAACGGAAAACTACTCATAGAGGAAGAGCAAGAGAAGAACGAAAAACTCAACGTCACTGTGGAAGATTTACCGGTTTTGATTGCAGTCTCCCTAGTCTCTGACGACGTTTCAATTCTTGAAAACGAAACAGCGCCTAATTTATTGTCAATCGACGTAAATTCCAGAAATACTTACTAA
- Protein Sequence
- MHSRVGYVGQCWHTLAVAIANVKLPIFSIMKRKSAPMYTNAMLKEALDAVKRGMPTSTASKLYSIPKTTLLYKKRGILPPVIKSRGPECILGDEYERQLVQWIFYTSQRGFPVLRVHLLDSVQLLLKQIKKKTKFINNRPGRQWYDAFRARHKHLTERMSQNLTYSRASVTEDKLRVWFNEVQMYFESKSLLDIDPSRVFNCDEFAFFLSPKESKVLVKKGDKTINFINNDEKECLTALLCGSADGKIAPPMVIFSYKRIPGHIAANMPKDWGIGHSENGWMTGETFYEYIANIFYPWLVKNDIMFPVVLFLDGHTSHLTMALSNFCREKGIELVALYPNATHILQPLEVAFFHPLKIAWVKVVHQWRLENNGKRIKRANFAQLLQEALEMLDVKTILENGFEKTGLHPFSADEISYQTYFKNSVNYDAITIPQIILSDRAEKEDHLAFFENNIEKEVLQMFKNVGEEAEWTGETKHKSLFYFWRKIKSKINSSEASHGISGKSEDSFVEETHVVDENGKLLIEEEQEKNEKLNVTVEDLPVLIAVSLVSDDVSILENETAPNLLSIDVNSRNTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01405614;
- 90% Identity
- iTF_00765474;
- 80% Identity
- -