Lace027481.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000367.1:96426-97699[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-09 2.8e-06 28.4 0.0 2 39 14 51 13 54 0.92 2 2 2.9 2.9e+03 -0.5 0.1 25 31 360 366 359 366 0.85
Sequence Information
- Coding Sequence
- atggtacacacgtatcgtcgcaaaacgactcccgtcgacaaggagcaactgaagaatgcagttgtggcggtgaagagagataaaatgagcgctcatgcagccgcaaaacagttcggtgtcccgagaaccacgttgaacaggtggctaaagaagaaccaggatgaaatacaacacgtggatgacgtggtcgtactACATGAAGGAGGCGTaacggttatgaacgcggaaagtgaaaaaactttggtggaatacttagtacattgcaacgatatgtactttgggctatcagcgaaggaaacccgtggtttagcctttgattttgccaaacaattgaatctgaaggtaccagcatcgtgggaaaccgctcgcatggcgggtaaagattggctaagcagctttctcaaacgacatccagcattatccatacgcaaaccagaagcgacaagtttagcacgtgccaccagtttcaatcgaacaaatgtGGAAAGGTTCTTCACGCTGCTGAGATCTCTGATGAATAAACATCATTTTCAggctcactgcatatggaatatggatgaGACGGGAGTAACAACCGTTCAGACACCGAATAGAGTCATCGGACGTCGAGGAGTGAAACAAATCGGGCGAGTGACTTCTGCGGAAAGAGGAACTCTCGTAACATTGGCGATGGCGGTGGTCAGCAACCGGGCGTTCTctacctccattttttattttcctcgtaaaaaattcaaaccacATTTCCTTAACGGCGGAACACCAGGCTGCACAGGTAAAGCGAATCCAAGTGGCTGGATGAACGCGGAGCATTTTGTCGAGTTTTTACAGTTTTTCCAGTCCCATGTGCGTGCTTCCGTCGACGCCCCAGTTTTACTGATACTCGACAATCACGAATCACATTTGTCCATCGCTGGTCTCGAATTTTGTAAAGCGAATGGAATCGTTCTCCTATCATTACCGCCGCATTGCTCGCACAAAATGCAACCGCTGGATCGCACCGTGTATGGCCCGTTAAAGAAAAGTGTACACGCACAGTGCGATTACTGGATGACATCGAATCCTGGTAGAACAATGACGATATACGACATCCCCCGGAATCGTGGCTAA
- Protein Sequence
- MVHTYRRKTTPVDKEQLKNAVVAVKRDKMSAHAAAKQFGVPRTTLNRWLKKNQDEIQHVDDVVVLHEGGVTVMNAESEKTLVEYLVHCNDMYFGLSAKETRGLAFDFAKQLNLKVPASWETARMAGKDWLSSFLKRHPALSIRKPEATSLARATSFNRTNVERFFTLLRSLMNKHHFQAHCIWNMDETGVTTVQTPNRVIGRRGVKQIGRVTSAERGTLVTLAMAVVSNRAFSTSIFYFPRKKFKPHFLNGGTPGCTGKANPSGWMNAEHFVEFLQFFQSHVRASVDAPVLLILDNHESHLSIAGLEFCKANGIVLLSLPPHCSHKMQPLDRTVYGPLKKSVHAQCDYWMTSNPGRTMTIYDIPRNRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765496;
- 90% Identity
- iTF_00885007;
- 80% Identity
- -