Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010001080.1:11581-14049[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-12 1.8e-09 38.6 0.0 4 41 605 641 603 645 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-12	1.8e-09	38.6	0.0	4	41	605	641	603	645	0.91

Sequence Information

Coding Sequence: ATGGGGGTCGAGGAGGAAGACCCTCCCCCTCTGCATGTGACTGTGTTGACTGGAACTAGTAATGGTGCGAGTGAACCTCAGGGAAATTCGGAAGCTAGCCGAACGCAGGATCCGTCCTCGAATATTCCTTTATCCCAATCCTCTCCTAGTAGGATGAATCGAGAATCGGTAAGCAGTGCACATGCATTTCGAGATCGTTCCCCATTGGGGACGGTCGTCCGCGCGGCAACTGCGATGGAAGTTGCAGAAGAAGAGGATATATCCGATATATCCAACGTTAACTCGAATAAGGGTAAAGATCGTAAAAGATGCCGCGAGATCGAAAATGAGGAACTCGTTTCTTCTCAGAAATTGCGCAAAAcgcctaataataataacaatagcGGCAAACCTCAAAAAGATAAGGAGACAGCGCCTCGCGCACAATTTAAGTATTCATCCTCGGATAAACCGCCGTTTTCAGTTTTTATAGAACCTTTGTCGTCAACTCAGGATGTTTCCGTTCATCGTTTGAAGGTCGCGTCACTTGTCTCGCAAATTGTCTTCAAGGACCATAAAGAATTGAAAGTCTCCGGGCGTAATAGATTCGTTGCGGAAATACGGACGGCGGAATCCGCCAATAGGCTTATTAATAACCAATACCTGCAACAGGCTAACCTCAAAGCATACATTCCGGCTTTTAAAGTCATGCGTACGGGCATTATTAGGGACATTCCCGACGAATATGACGTTCAAGCACTTATTCCTCATATCGAAACTAGTGAAGGCCGTACAGTAAAAATATACGCGATAGAACGTATGAATCGTACGATAAGAGGAAAGGATGGACCGGAAACGGTTCCTTCTATGTCATTGCGTGTTAAGTTTTTAGGACAGAAATTGCCAAATTATGTCTTTATTCATAAAACTAGGTATAGAGTATTTCCATATatcagtaaaacaaaaatttgctACTCGTGCTTTAGGCTAGGCCATATGGGCAATATTTGTAAAAGCTCGCCGCGATGTTTGTTATGCGGAGGAGACAAGCAAATTGAGAAAGAAGGCTGCCCACGTATAAATCAGCCCCCGAAATGTTTGAATTGTGGCAACGGTCATCTAGCTACTTCGCTCGACTGCCCCGCGGTCGCGTTCCAGAATGAGATTAACTCGCTTGCCGCCCATGAGAATTTTACATACAAAGAAGCTCGTAGAAGATTAAAACGGattgaaaatgaaaataaaccGGTAAATCCTAGGCTTAATTATGCGGAATTCCCGTTGCTTCCTGAAACCCGAGAAATGGAGAATGATGTCAATAATAGcaattatcatcatcatcatcatcaaggCGATGTTcgtgttaataaatttgttccAATAAGTAATAGATTTGCGCCGCTTCAGAAGCTGCCGCTGGAAGCGAATGAGGAGGATACAAACGCCCTTACATACTCCAATATAGTTTCCCGTCCTAGGGGAACAACTCGCAATGGAACTACTAGGCAAACAGTGGTTTCTTACCCGAGGGGGATTTCTGTTAGTAAAAGGACTCCTAATGCGCGGTATCGACTTCCGACGTCACATTACAATGAACTGGTATTCCCTAACGGAAGGACTCAATCAGTTGCGGCGGACCCGAAAGACTCGCAGGAATCGCCGGAATCGCCGACTAAGCTGAATTCACAAGATGATTTAATTCATACAAGGACAAGGACAAAAATAAGTATGCAGCCTCAGCACAGATGTTCTCAGGTCATCTTCAATACATCCAGGGACATGTCCAAGGATGACTTGAGGACGACTTGTGCTATCTGGGTGGTGATTAaaaaaGATATGGAAAAGGCTCTAGAAGCTGCTTGGAGTGGTATGTCAATCTCCACCGCAGCAACAACATATAATGTACCAAAATCAACATTGCATGGCAGATACACTGGCAAAGTTCCTGATCGGCGTAAGATGGGACCCAAGTCGATACTTACAGAGGCAGAAGAGGATCGCTTAGAGAAGTGA
Protein Sequence: MGVEEEDPPPLHVTVLTGTSNGASEPQGNSEASRTQDPSSNIPLSQSSPSRMNRESVSSAHAFRDRSPLGTVVRAATAMEVAEEEDISDISNVNSNKGKDRKRCREIENEELVSSQKLRKTPNNNNNSGKPQKDKETAPRAQFKYSSSDKPPFSVFIEPLSSTQDVSVHRLKVASLVSQIVFKDHKELKVSGRNRFVAEIRTAESANRLINNQYLQQANLKAYIPAFKVMRTGIIRDIPDEYDVQALIPHIETSEGRTVKIYAIERMNRTIRGKDGPETVPSMSLRVKFLGQKLPNYVFIHKTRYRVFPYISKTKICYSCFRLGHMGNICKSSPRCLLCGGDKQIEKEGCPRINQPPKCLNCGNGHLATSLDCPAVAFQNEINSLAAHENFTYKEARRRLKRIENENKPVNPRLNYAEFPLLPETREMENDVNNSNYHHHHHQGDVRVNKFVPISNRFAPLQKLPLEANEEDTNALTYSNIVSRPRGTTRNGTTRQTVVSYPRGISVSKRTPNARYRLPTSHYNELVFPNGRTQSVAADPKDSQESPESPTKLNSQDDLIHTRTRTKISMQPQHRCSQVIFNTSRDMSKDDLRTTCAIWVVIKKDMEKALEAAWSGMSISTAATTYNVPKSTLHGRYTGKVPDRRKMGPKSILTEAEEDRLEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -