Ldol043891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopterna dolabrata
Gene Symbol
-
Assembly
GCA_954871275.1
Location
OX940979.1:3230513-3234891[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.081 26 7.6 0.5 2 20 7 25 6 27 0.90
2 16 0.12 37 7.1 0.6 3 20 80 97 79 99 0.90
3 16 0.081 26 7.6 0.5 2 20 144 162 143 164 0.90
4 16 0.12 37 7.1 0.6 3 20 217 234 216 236 0.90
5 16 0.12 37 7.1 0.6 3 20 289 306 288 308 0.90
6 16 0.12 37 7.1 0.6 3 20 361 378 360 380 0.90
7 16 0.12 37 7.1 0.6 3 20 433 450 432 452 0.90
8 16 0.12 37 7.1 0.6 3 20 505 522 504 524 0.90
9 16 0.12 37 7.1 0.6 3 20 577 594 576 596 0.90
10 16 0.12 37 7.1 0.6 3 20 684 701 683 703 0.90
11 16 0.12 37 7.1 0.6 3 20 828 845 827 847 0.90
12 16 0.12 37 7.1 0.6 3 20 900 917 899 919 0.90
13 16 0.12 37 7.1 0.6 3 20 972 989 971 991 0.90
14 16 0.12 37 7.1 0.6 3 20 1044 1061 1043 1063 0.90
15 16 0.12 37 7.1 0.6 3 20 1116 1133 1115 1135 0.90
16 16 5.2 1.6e+03 1.9 0.2 3 12 1188 1197 1187 1199 0.88

Sequence Information

Coding Sequence
ATGGCATCTCATAGTTTGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCAGAGGAGAAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCAGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGATTTTTTCATCATCCCCTCTGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAACAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGATTTTTTCATCATCCCCCCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCCGAGGAGGAGACTGGTGAAGAAAAGGTACACAAACGAAGATGGGAAGATTCTCCAGATTTTTTCATCATACCCTCTGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACACCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGGAGGGAAGATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGTCATCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAAGATTATCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTTTAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCTTATTTCCATCTGGGCCTTCATGAGAAGAATTGTTACTATTCTTCATCTGATTCAGAAGCTCACCTCATAATCGACACCTCACCGGAGGAGGAGACTGGTGAAGAAAAGGTACTCAAACGAAGAAGGGAATATTCTCCAGTCATTTTTTCATCATCCCCTCTGGTAAGTTATAAATCCTCAAAGAATTGCTCAGTTTGTGGATTGAGATTCAATTCtattaaaaagtag
Protein Sequence
MASHSLNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEKTGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPDFFIIPSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEQVLKRRREDSPDFFIIPPDSEAHLIIDISPEEETGEEKVHKRRWEDSPDFFIIPSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDISPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDTSPEEETGEEKVLKRRREDSPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIVISPEEETGEEKVLKRRREDYPVIFSSSPLVSFKSSKNCSVCGLRFNSYFHLGLHEKNCYYSSSDSEAHLIIDTSPEEETGEEKVLKRRREYSPVIFSSSPLVSYKSSKNCSVCGLRFNSIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-