Ldol058820.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- Zfa
- Assembly
- GCA_954871275.1
- Location
- OX940983.1:23680035-23687015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.8 1.8e+03 1.8 0.2 6 23 247 266 244 266 0.85 2 12 3.9 1.2e+03 2.3 1.5 1 21 364 384 364 388 0.87 3 12 0.00076 0.24 14.0 1.1 2 22 445 465 444 468 0.88 4 12 3.2 1e+03 2.6 4.7 2 19 484 501 483 506 0.90 5 12 0.00076 0.24 14.0 1.5 1 23 511 535 511 535 0.91 6 12 0.019 6 9.6 3.3 3 23 546 567 545 567 0.93 7 12 0.0019 0.59 12.8 0.9 1 20 572 591 572 593 0.93 8 12 0.017 5.5 9.7 0.9 1 23 622 644 622 644 0.96 9 12 4.5e-05 0.014 17.9 1.7 1 23 654 675 654 675 0.96 10 12 8.3e-06 0.0026 20.2 2.8 1 23 681 704 681 705 0.94 11 12 0.00026 0.082 15.5 0.4 3 23 717 738 715 738 0.95 12 12 0.6 1.9e+02 4.9 1.0 1 11 745 755 745 757 0.90
Sequence Information
- Coding Sequence
- ATGAGTGACGATGATGACGAAGACACCCATTTCTGCTTGAGGTGCAGTACAACCATTACTGGGTTGGACGCATACGTGGCGCACAGGAAAGCAAAATGTAACCTGGGCCAAACAACCGACATATACGCCGCAGGACCGTCTGGACTGCAAGTTGATGCCATTCGGGAAGACTCCACAGCGAATCTTGGTATAGTTTCAGAGAGAGCTAGAACTCCAGAAGTGGACTTGCTGCTCCATCGTAACCTCACTCACCCGACGTTCACTCCACCGACACCGCATAAGGATGAACCAGTTGCTGATGACTATTTCTTCTCATCATTGTGTCTCCAGAGCAGTTCCAAGATGGGTGAACATACTACAGCAATGAAACACCACGGAGTGCTGACCCGCAGCAAGATCTTGGATAGAAGCACTGTAAGAGAAGACAAAGTCCTTCAGGGAGATGAAGAAGAAGCGCAAGAAGACAGTGAATCGGAAGGTTCAGACGACGGGCGGCATCCTCCACCGACAAGTGGTGGCAAATGGCTTCCTGGATTCAGACCCACACAGCGTGCGACGTCGATCCTATGGAAATCTCCTGTAACACCTGAGCGTGCAGAATCTGACACAAGAATTGATCATCAGACGGTTGTGAGGCGTTCATTAGCTCCACCTCCCACCCATACAAGAGGGAAGTGGGATTCATCAGAAAGACCGTGGGGTCCATTGCGTAAGCCAAATGCATACTGGTGTGGTCCATGCAACCGAAGGCTGAGCTCTAGGATTGTTTACGAGAGACATATCAAAAGCGAGCTACACTTCAAAAGGACAAACCCCTGGAGGACGCAAGTAGCCCTAGGTAAAAGAGCTAGAAGACGGACTCGGATCGCTGAAGAATCTACTCTCCGAATGCTTAATCGAAAAACGAGAGAGGTCAAAGGCGCGAAGAGACGCCGTGGGGCGACCGTCTGCGACGTCTGTAATTACCGTGTCGCACCGCATCTGATGGGGAAACACCTCATATCCCACTACCACTGCAACCACCCGAGAAACGACATGAACAACGAGATGGTCCTTAAGCACATATCGAGTATTGTCCGACAAGCACCCTTTCAGTGCGGCCTGTGCAAGTTTTATTGCAACACTCAACTTGCATTTTTGAGTCACTGGGCGTCGGAAATGCATCGGAAGAATGACGAGGAGAGAGCAGGGGTATACTGGTGTCCAAACTGCAACTTCGAAGTTCACTCCAGCGTTGATATGGGTTGTCATCTCGTCGAAGACTTGCATCGGGATCGAGTGATGGTTGTCAATCATTCAGTGCCCACCATCATCCAGAAAATCACTCCTCTTCAATGCGAAGTTTGCGGCAAGTGTTTCCGGTACAATTTACAAGTCCGAGCACATAGCAAAGTCTCGGGCCACGAGCAAACCAGAAGTACAGCATCTAATAGCTACCAGGAAGCCCTGAATTGCTCCGAGTGCCCTTACCGGTGCTACTCACTCGTTTCTTTCCAACGCCACTGCTATATGAAGCATAAGAAAGTGCCTTACTTCTGCCGGAGATGCGGTTTGAGCTTTAAGAGCTCTGCTGAGGTCAAGAAACACCGTAAGTCCACAGCACACCTAGATGCTGCTGGCCCTAAAACGAGACACTGCTCTCACTGCCGTTTGTCTTTCGACAAGCTATCATCGCTGAAACTTCACTTGGAAGAAGTTCACCCAGATTATAAACACAGGTGCCTGAAGTGCGGAGAGATGTTTACGTTGAAACAACAACTATCGAAACATGCTACGACTTGTCAAATGTCAAAGTATAACGATCCAGAGCCTGTGGATGAGCCAGCGAAGGCGACATGTTTCAGCGAAACGGGGCAGAAGGAGTTCAGCTGTGACAGATGtcagttcacttcaaaaactgaGTCGGAACTCTTGGTACACAAATTGCTGCACGACAACGATGAATCGAAGTCAGGGAAGTTCGACTGTCCATATTGCAACAAGACGTTTAGTGATTCGTACATGAAGAAACATATGATCACACATACGTCTGAGCGCCCGTATACATGCGAATTCTGCAATTACAGTTTCAGCCGCCAAGATACTCTGAATCGTCATGTGGTCAAAATTCATCACGTTGAAATGGACAGTTTGAGACTGAAACTCGACTGTGGGTCATGTAATAAACGATTTCCCTCGCAAATCGCTCTTGACCGCCACATGAAATCGACACACCAAGGCCGAACGAGATCATTCAAATGTTCGGAATGTGATCAAGCTTTTTACGGAAAGTAA
- Protein Sequence
- MSDDDDEDTHFCLRCSTTITGLDAYVAHRKAKCNLGQTTDIYAAGPSGLQVDAIREDSTANLGIVSERARTPEVDLLLHRNLTHPTFTPPTPHKDEPVADDYFFSSLCLQSSSKMGEHTTAMKHHGVLTRSKILDRSTVREDKVLQGDEEEAQEDSESEGSDDGRHPPPTSGGKWLPGFRPTQRATSILWKSPVTPERAESDTRIDHQTVVRRSLAPPPTHTRGKWDSSERPWGPLRKPNAYWCGPCNRRLSSRIVYERHIKSELHFKRTNPWRTQVALGKRARRRTRIAEESTLRMLNRKTREVKGAKRRRGATVCDVCNYRVAPHLMGKHLISHYHCNHPRNDMNNEMVLKHISSIVRQAPFQCGLCKFYCNTQLAFLSHWASEMHRKNDEERAGVYWCPNCNFEVHSSVDMGCHLVEDLHRDRVMVVNHSVPTIIQKITPLQCEVCGKCFRYNLQVRAHSKVSGHEQTRSTASNSYQEALNCSECPYRCYSLVSFQRHCYMKHKKVPYFCRRCGLSFKSSAEVKKHRKSTAHLDAAGPKTRHCSHCRLSFDKLSSLKLHLEEVHPDYKHRCLKCGEMFTLKQQLSKHATTCQMSKYNDPEPVDEPAKATCFSETGQKEFSCDRCQFTSKTESELLVHKLLHDNDESKSGKFDCPYCNKTFSDSYMKKHMITHTSERPYTCEFCNYSFSRQDTLNRHVVKIHHVEMDSLRLKLDCGSCNKRFPSQIALDRHMKSTHQGRTRSFKCSECDQAFYGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365926;
- 90% Identity
- -
- 80% Identity
- -