Ldol062007.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- lola
- Assembly
- GCA_954871275.1
- Location
- OX940984.1:31346012-31371665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4e-05 0.0044 19.5 0.7 3 21 34 52 32 53 0.96 2 14 0.049 15 8.3 4.6 1 21 61 81 61 84 0.90 3 14 0.012 3.7 10.3 2.3 1 17 100 116 100 121 0.88 4 14 0.0074 2.3 10.9 7.7 1 23 129 151 129 152 0.95 5 14 0.0052 1.7 11.4 2.2 1 21 185 205 185 206 0.92 6 14 0.0017 0.53 12.9 2.3 1 23 214 237 214 237 0.94 7 14 0.42 1.3e+02 5.4 0.9 5 21 265 281 263 282 0.92 8 14 0.0014 0.43 13.2 1.1 1 23 290 313 290 313 0.95 9 14 8.7 2.8e+03 1.2 1.9 1 22 317 338 317 338 0.92 10 14 0.058 18 8.1 0.2 5 23 350 369 346 369 0.89 11 14 0.013 4.1 10.1 0.8 1 20 385 404 385 406 0.94 12 14 0.0052 1.7 11.4 2.7 3 21 416 434 414 435 0.93 13 14 0.012 3.7 10.2 0.2 1 19 446 464 446 466 0.93 14 14 0.00021 0.068 15.7 0.8 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- ATGACAACAGACCTTTCTCCTGCAACGATTGCGGAAGAAGATACAAACATAATTCGACGCTCAGAGCTCACCAAAGACACGAGTGACGTCTCTTTCGGCTGTGAGCAATGCGGTCGGAAGTACAAATACAGAAGCAATCTCCGAGCTCACCAGCGGAACGAGTGCGGTAAACCTCCAAGATTCTATTGTCACCTTTGCGAGTACAAAACTAACGTCAAAAGTAACTTCAAGACTCATTTAGGCTTCAAACATAAGTTTTTCTTCCCGAAAGGATTCCAACTTTTGGCGGATAAGCCTTACAAATGCGACATGTGTAACCGATCCTATACGCACCGCCGCACTTTGTTGTTCCACAAAAAGAATGAATGTGGGAAAGAAGCTCAATATTTCTGCTCTCATTGTACCTATAAGACCAAAGTCAAGAGCAACTTGAAGACTCACACGATCAGACACCACGAGAAAGAATACCTTCAACTGCTGTATTCGTTGAATGGGTTTCCCGGTTTTCCAGGTTGGTACGGCTTGAACCCCGACAAGCTCAAGGACCGGATTTACAACTGCGAAGAGTGTGGGCGCTCTTACAAGTACAGGCGGACCCTCAAGTTCCACCAGAAGTTCGAGTGTGGGAAGGAGCCTCAGTTCCAGTGCTCTTACTGCCCTTACAAAGCCAAGAGAAACGCATCTTTGAAAATCCACGTTCATAACAAGCACAGGGAACGTCTTCCTGTTTCTTTGAACGTTCAAAACGAATGTCTGATCACCCTGCTCAAGTCCTCTGACGTTTTCCATTGCCAGTGCGGCAAAATCTACAAATACCGACGCAGTCTCGGCCTCCATCAGAAGTACGAATGCGGAAAAGAGCCGCAGTTCGTGTGCCGCTACTGCCCTTACAAAGGAAAACAGAAAGTCGCCCTTAAAAAACACTTATACATCAAACACAATCGTGATTTCCGTTGCCACTGCTGCTTCCTCAAGCTCGACGATTTGGCATTCCTCAAATGGCACATGGCGACCAACTGCGGCCGCGGTCCACAACTTTACTGCATTCTGTGTGAGTACGCGACCAAAAACAAAAGCGCCTTGCAAAGTCACGTCGCCAGACGCCATCTTTCATCTGCTCTCGCCACAGGTTTCCTGAGCACTGTCAGCAATTATAAGTGCAACAGATGCTCGTGGACTTTTGAAGAGTTCACATTATTTAAATGGCACCAAGTGACGAACTGCGGTCGCGGCCCCAAACTTTTCTGCATGTTCTGCGGATACCACACGGAAAAGAAGAGCCATCTCCAGCGGCACATCAACCGAATTCCTGAACCGATCAGAGACAACAAGGCCTACATCTGCCAAGCCTGCGGCAAATCGTACAAAACGCGGACCGGATGGCGCTTGCACGCTTTTCATGACTGCAATAAAGAACCTCAGTTTTCGTGCGAGTTCTGCGAGTATGTTGCCTACCGCAAGGGGAATCTTAAGCAGCACATTCGACTGCGACATTTCAAGTTCTTGGATCAACATTGA
- Protein Sequence
- MTTDLSPATIAEEDTNIIRRSELTKDTSDVSFGCEQCGRKYKYRSNLRAHQRNECGKPPRFYCHLCEYKTNVKSNFKTHLGFKHKFFFPKGFQLLADKPYKCDMCNRSYTHRRTLLFHKKNECGKEAQYFCSHCTYKTKVKSNLKTHTIRHHEKEYLQLLYSLNGFPGFPGWYGLNPDKLKDRIYNCEECGRSYKYRRTLKFHQKFECGKEPQFQCSYCPYKAKRNASLKIHVHNKHRERLPVSLNVQNECLITLLKSSDVFHCQCGKIYKYRRSLGLHQKYECGKEPQFVCRYCPYKGKQKVALKKHLYIKHNRDFRCHCCFLKLDDLAFLKWHMATNCGRGPQLYCILCEYATKNKSALQSHVARRHLSSALATGFLSTVSNYKCNRCSWTFEEFTLFKWHQVTNCGRGPKLFCMFCGYHTEKKSHLQRHINRIPEPIRDNKAYICQACGKSYKTRTGWRLHAFHDCNKEPQFSCEFCEYVAYRKGNLKQHIRLRHFKFLDQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -